Cluster no. 106

Cluster no. 106

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Cluster is part of supercluster: 13

Cluster characteristics:

size	3234
size_real	3234
ecount	73950
supercluster	13
annotations_summary	0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH 0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
pair_completeness	0.600197921820881
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000309214594928881
satellite_probability	7.63705200701412e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1060
S5	9
S4	3
S7	1060
S9	1080
S6	6
S2	7
S1	7
S3	4

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	7590.0	49.5	49.5	7720.0	8150.0	16.0	76.5	21	17.0
S5	49.5	2.0	0.0	45.0	47.5	1.5	0.5	0	0.0
S4	49.5	0.0	1.0	36.5	64.0	0.0	0.0	0	0.0
S7	7720.0	45.0	36.5	7900.0	8170.0	14.0	84.0	17	19.0
S9	8150.0	47.5	64.0	8170.0	8980.0	14.5	80.5	22	23.5
S6	16.0	1.5	0.0	14.0	14.5	0.0	0.0	0	0.0
S2	76.5	0.5	0.0	84.0	80.5	0.0	1.0	0	0.5
S1	21.0	0.0	0.0	17.0	22.0	0.0	0.0	1	0.0
S3	17.0	0.0	0.0	19.0	23.5	0.0	0.5	0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.000	1.060	1.020	1.000	0.996	1.090	0.983	1.070	0.885
S5	1.060	6.940	0.000	0.949	0.942	16.500	1.040	0.000	0.000
S4	1.020	0.000	3.240	0.744	1.230	0.000	0.000	0.000	0.000
S7	1.000	0.949	0.744	1.010	0.985	0.937	1.060	0.858	0.975
S9	0.996	0.942	1.230	0.985	1.020	0.912	0.959	1.040	1.130
S6	1.090	16.500	0.000	0.937	0.912	0.000	0.000	0.000	0.000
S2	0.983	1.040	0.000	1.060	0.959	0.000	1.250	0.000	2.540
S1	1.070	0.000	0.000	0.858	1.040	0.000	0.000	19.900	0.000
S3	0.885	0.000	0.000	0.975	1.130	0.000	2.540	0.000	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-PROT Ale Ty1-PROT 1 0.00031

Tekay Ty3-CHDII Tekay Ty3-CHDII 5 0.00155

CRM Ty3-RH CRM Ty3-RH 1 0.00031

clusters with similarity:

Cluster	Number of similarity hits

21	264
51	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

21	129	0.146
83	58	0.0745
2600	8	0.0196
5	7	0.00309
4	6	0.003
9	6	0.00545
32	6	0.00603
11	5	0.00304
8	4	0.0018
12	4	0.00251
3780	4	0.00982
4730	4	0.00983
9650	4	0.00985
18	3	0.00181
53	3	0.00312
1690	3	0.00734
2930	3	0.00738
3780	3	0.00738
9000	3	0.00739
11100	3	0.00739
12000	3	0.0074
12600	3	0.0074
36	2	0.00149
51	2	0.00124
65	2	0.00247
162	2	0.00221
182	2	0.00347
3690	2	0.00492
4280	2	0.00493
7940	2	0.00493
8020	2	0.00493
8300	2	0.00494
14700	2	0.00493
15200	2	0.00493
16400	2	0.00493
23400	2	0.00494
24200	2	0.00494
24600	2	0.00494
39800	2	0.00494
43300	2	0.00494
49500	2	0.00494
51600	2	0.00494
52900	2	0.00494
53000	2	0.00494
56800	2	0.00494
63600	2	0.00494
63700	2	0.00494
67300	2	0.00494
17	1	0.000495
22	1	0.000492
40	1	0.00102
69	1	0.000655
74	1	0.00137
75	1	0.00099
78	1	0.000669
79	1	0.00162
91	1	0.000944
102	1	0.0013
107	1	0.00103
114	1	0.00133
124	1	0.0016
131	1	0.00134
133	1	0.00209
138	1	0.00165
140	1	0.00118
157	1	0.00123
172	1	0.00215
177	1	0.00192
199	1	0.00201
246	1	0.00201
261	1	0.00221
265	1	0.00215
388	1	0.00244
856	1	0.00242
3560	1	0.00245
4020	1	0.00245
9170	1	0.00247
9920	1	0.00246
10000	1	0.00246
11100	1	0.00246
12100	1	0.00247
12800	1	0.00247
13200	1	0.00247
14000	1	0.00247
15700	1	0.00247
15800	1	0.00247
16800	1	0.00247
19000	1	0.00247
19200	1	0.00247
20800	1	0.00247
21700	1	0.00247
24400	1	0.00247
27200	1	0.00247
28400	1	0.00247
32700	1	0.00247
36100	1	0.00247
37900	1	0.00247
38500	1	0.00247
39500	1	0.00247
40200	1	0.00247
42600	1	0.00247
42700	1	0.00247
43100	1	0.00247
44800	1	0.00247
48600	1	0.00247
49400	1	0.00247
62300	1	0.00247
63600	1	0.00247
63900	1	0.00247
64900	1	0.00247
67000	1	0.00247
69800	1	0.00247

CL106 ----> CL21

No. of shared pairs: :129

CL106 ----> CL83

No. of shared pairs: :58