Cluster no. 102

Cluster no. 102

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Cluster is part of supercluster: 3

Cluster characteristics:

size	3339
size_real	3339
ecount	73036
supercluster	3
annotations_summary
pair_completeness	0.639980353634578
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0173704702006589
satellite_probability	3.2248535574017e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1090
S5	2
S4	8
S7	1080
S9	1140
S6	2
S2	9
S1	0
S3	4

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	7720.0	10.0	42.5	7840.0	8160.0	13.5	44.5	0	22.5
S5	10.0	1.0	0.0	8.5	8.5	0.0	0.0	0	0.0
S4	42.5	0.0	0.0	36.5	49.5	0.0	0.5	0	0.0
S7	7840.0	8.5	36.5	7750.0	8120.0	17.0	44.0	0	30.0
S9	8160.0	8.5	49.5	8120.0	8470.0	14.0	52.0	0	33.5
S6	13.5	0.0	0.0	17.0	14.0	0.0	0.0	0	0.0
S2	44.5	0.0	0.5	44.0	52.0	0.0	1.0	0	0.5
S1	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0	0.0
S3	22.5	0.0	0.0	30.0	33.5	0.0	0.5	0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.991	1.09	1.010	1.010	1.000	0.929	0.956	NA	0.796
S5	1.090	93.20	0.000	0.930	0.890	0.000	0.000	NA	0.000
S4	1.010	0.00	0.000	0.867	1.130	0.000	1.990	NA	0.000
S7	1.010	0.93	0.867	0.995	0.999	1.170	0.946	NA	1.060
S9	1.000	0.89	1.130	0.999	0.997	0.923	1.070	NA	1.140
S6	0.929	0.00	0.000	1.170	0.923	0.000	0.000	NA	0.000
S2	0.956	0.00	1.990	0.946	1.070	0.000	3.600	NA	2.960
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	0.796	0.00	0.000	1.060	1.140	0.000	2.960	NA	0.000

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

40	480
53	439
12	371
75	6
104	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

12	245	0.157
40	165	0.176
53	147	0.159
75	15	0.0154
1940	9	0.0242
104	7	0.0126
3620	7	0.0189
4	6	0.00305
114	5	0.00701
22	4	0.00201
54	4	0.00333
91	3	0.00294
7280	3	0.00813
9	2	0.00188
83	2	0.0027
2950	2	0.00541
26500	2	0.00544
37700	2	0.00544
61700	2	0.00544
5	1	0.000449
8	1	0.000458
18	1	0.000616
24	1	0.00102
36	1	0.000765
51	1	0.000635
59	1	0.000649
68	1	0.000865
100	1	0.00126
103	1	0.00162
106	1	0.0013
110	1	0.000999
139	1	0.00159
235	1	0.00222
247	1	0.00245
490	1	0.00264
577	1	0.00265
1350	1	0.00268
1530	1	0.00269
1600	1	0.00268
7180	1	0.00271
8000	1	0.00271
10100	1	0.00272
12200	1	0.00272
12700	1	0.00272
26400	1	0.00272
26600	1	0.00272
52800	1	0.00272
61800	1	0.00272
65600	1	0.00272

CL102 ----> CL12

No. of shared pairs: :245

CL102 ----> CL40

No. of shared pairs: :165

CL102 ----> CL53

No. of shared pairs: :147

CL102 ----> CL75

No. of shared pairs: :15