Cluster no. 101

Cluster no. 101

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Cluster is part of supercluster: 1

Cluster characteristics:

size	3342
size_real	3342
ecount	100836
supercluster	1
annotations_summary	26.00% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 15.83% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
pair_completeness	0.554418604651163
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00119688809096349
satellite_probability	1.46614129999921e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	1150
S4	1090
S7	6
S9	1
S6	1090
S2	6
S1	0
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0	0.0	0.0	0	0	0.0	0	0
S5	0	12800	11800.0	73.0	4	11200	40.0	0	4
S4	0	11800	10800.0	65.5	3	10400	31.5	0	2
S7	0	73	65.5	0.0	0	65	0.0	0	0
S9	0	4	3.0	0.0	0	5	0.0	0	0
S6	0	11200	10400.0	65.0	5	9790	29.0	0	2
S2	0	40	31.5	0.0	0	29	0.0	0	0
S1	0	0	0.0	0.0	0	0	0.0	0	0
S3	0	4	2.0	0.0	0	2	0.0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	0.996	1.000	1.010	0.935	1.000	1.120	NA	1.400
S4	NA	1.000	0.996	0.981	0.762	1.000	0.955	NA	0.762
S7	NA	1.010	0.981	0.000	0.000	1.020	0.000	NA	0.000
S9	NA	0.935	0.762	0.000	0.000	1.330	0.000	NA	0.000
S6	NA	1.000	1.000	1.020	1.330	0.996	0.924	NA	0.801
S2	NA	1.120	0.955	0.000	0.000	0.924	0.000	NA	0.000
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	1.400	0.762	0.000	0.000	0.801	0.000	NA	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-CHDII Tekay Ty3-CHDII 529 0.16

Tekay Ty3-INT Tekay Ty3-INT 869 0.26

clusters with similarity:

Cluster	Number of similarity hits

70	1920
67	1420
169	93
29	78
3	13
155	4

clusters connected through mates:

Cluster	Number of shared read pairs	k

67	343	0.257
70	265	0.33
169	130	0.201
29	45	0.0297
3	14	0.00424
63	4	0.00462
7170	3	0.00624
48	2	0.00138
21800	2	0.00417
25000	2	0.00417
30100	2	0.00417
54500	2	0.00417
67800	2	0.00417
2	1	0.000494
6	1	0.00032
19	1	0.000457
37	1	0.000819
39	1	0.000696
43	1	0.000576
45	1	0.000523
132	1	0.00167
5580	1	0.00208
42700	1	0.00208
47600	1	0.00208
53800	1	0.00208
67100	1	0.00208

CL101 ----> CL67

No. of shared pairs: :343

CL101 ----> CL70

No. of shared pairs: :265

CL101 ----> CL169

No. of shared pairs: :130

CL101 ----> CL29

No. of shared pairs: :45

CL101 ----> CL3

No. of shared pairs: :14