Cluster no. 100

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Cluster is part of supercluster: 43

Cluster characteristics:

size 3344
size_real 3344
ecount 34166
supercluster 43
annotations_summary 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.03% Class_I/LINE:LINE-RT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.03% organelle/plastid
pair_completeness 0.592380952380952
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000897129186602871
satellite_probability 8.75468016753053e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 339
S5 379
S4 393
S7 350
S9 362
S6 396
S2 387
S1 355
S3 383
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 889.0 42.5 59.0 906.0 913.0 69.5 42.5 50.5 49.0
S5 42.5 1410.0 1470.0 59.0 43.0 1540.0 44.0 44.5 37.0
S4 59.0 1470.0 1650.0 70.5 67.0 1630.0 38.5 27.0 29.5
S7 906.0 59.0 70.5 911.0 898.0 84.0 66.5 75.0 71.0
S9 913.0 43.0 67.0 898.0 962.0 61.5 50.0 51.0 53.5
S6 69.5 1540.0 1630.0 84.0 61.5 1740.0 53.5 39.5 40.0
S2 42.5 44.0 38.5 66.5 50.0 53.5 841.0 964.0 988.0
S1 50.5 44.5 27.0 75.0 51.0 39.5 964.0 978.0 1090.0
S3 49.0 37.0 29.5 71.0 53.5 40.0 988.0 1090.0 1130.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 3.330 0.1020 0.1320 3.260 3.330 0.1490 0.1560 0.1720 0.1590
S5 0.102 2.1900 2.1200 0.137 0.101 2.1300 0.1040 0.0975 0.0771
S4 0.132 2.1200 2.2200 0.152 0.146 2.1000 0.0844 0.0550 0.0572
S7 3.260 0.1370 0.1520 3.150 3.150 0.1740 0.2340 0.2460 0.2210
S9 3.330 0.1010 0.1460 3.150 3.420 0.1290 0.1780 0.1690 0.1690
S6 0.149 2.1300 2.1000 0.174 0.129 2.1500 0.1120 0.0772 0.0744
S2 0.156 0.1040 0.0844 0.234 0.178 0.1120 3.0100 3.2100 3.1300
S1 0.172 0.0975 0.0550 0.246 0.169 0.0772 3.2100 3.0300 3.2200
S3 0.159 0.0771 0.0572 0.221 0.169 0.0744 3.1300 3.2200 3.1700

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 3e-04
LINE LINE-RT LINE LINE-RT 1 3e-04
Tekay Ty3-INT Tekay Ty3-INT 2 6e-04
TatV Ty3-RT TatV Ty3-RT 1 3e-04

clusters with similarity:

Cluster Number of similarity hits
113 30
1 1
19 1
60 1
305 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
113 32 0.0395
194 23 0.0438
310 18 0.0392
277 17 0.0369
432 15 0.0337
305 10 0.0216
685 10 0.0229
3 5 0.00154
4 4 0.00197
1360 4 0.00924
4840 4 0.00928
7260 4 0.00929
15 3 0.00111
17 3 0.00147
43 3 0.00178
60 3 0.00212
99 3 0.00316
196 3 0.00514
367 3 0.0069
2660 3 0.00695
3980 3 0.00697
4530 3 0.00696
5120 3 0.00696
8 2 0.000891
12 2 0.00124
18 2 0.00119
22 2 0.000973
36 2 0.00146
39 2 0.00144
53 2 0.00203
54 2 0.00158
57 2 0.00163
75 2 0.00193
77 2 0.003
83 2 0.00249
85 2 0.00214
96 2 0.00205
1230 2 0.00464
1240 2 0.00464
3130 2 0.00465
7370 2 0.00466
8760 2 0.00465
9000 2 0.00466
10000 2 0.00466
15600 2 0.00466
18300 2 0.00466
19200 2 0.00466
24400 2 0.00466
27800 2 0.00466
41900 2 0.00466
61500 2 0.00466
67300 2 0.00466
1 1 0.000466
5 1 0.000437
9 1 0.000888
11 1 0.000599
19 1 0.000468
23 1 0.000641
24 1 0.000956
26 1 0.000739
31 1 0.000849
34 1 0.000623
40 1 0.001
45 1 0.000538
50 1 0.00157
55 1 0.000873
56 1 0.000953
58 1 0.000997
71 1 0.000737
79 1 0.00156
80 1 0.000856
88 1 0.000926
89 1 0.00111
91 1 0.000923
102 1 0.00126
104 1 0.00162
105 1 0.00105
109 1 0.00112
119 1 0.00139
125 1 0.00109
128 1 0.000953
139 1 0.00145
140 1 0.00115
141 1 0.00165
143 1 0.00118
157 1 0.00119
172 1 0.00204
177 1 0.00184
182 1 0.00167
184 1 0.00143
189 1 0.00179
211 1 0.00164
216 1 0.00182
255 1 0.00215
266 1 0.00218
354 1 0.00226
402 1 0.00228
425 1 0.00221
458 1 0.00226
491 1 0.00226
600 1 0.00229
640 1 0.00227
1050 1 0.00231
1140 1 0.00228
1680 1 0.00232
1980 1 0.00231
2140 1 0.00231
3510 1 0.00231
5060 1 0.00232
5580 1 0.00233
7470 1 0.00233
8030 1 0.00233
8420 1 0.00233
9020 1 0.00233
11000 1 0.00233
11200 1 0.00233
11700 1 0.00233
12900 1 0.00233
15100 1 0.00233
15900 1 0.00233
21800 1 0.00233
23300 1 0.00233
29000 1 0.00233
29900 1 0.00233
35800 1 0.00233
36500 1 0.00233
44800 1 0.00233
47800 1 0.00233
49500 1 0.00233
52400 1 0.00233
54300 1 0.00233
55600 1 0.00233
57400 1 0.00233
65400 1 0.00233
65600 1 0.00233
67200 1 0.00233
67500 1 0.00233

CL100 ----> CL113

image

No. of shared pairs: :32

CL100 ----> CL194

image

No. of shared pairs: :23

CL100 ----> CL310

image

No. of shared pairs: :18

CL100 ----> CL277

image

No. of shared pairs: :17

CL100 ----> CL432

image

No. of shared pairs: :15

CL100 ----> CL305

image

No. of shared pairs: :10

CL100 ----> CL685

image

No. of shared pairs: :10