Cluster no. 98

Cluster no. 98

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Cluster is part of supercluster: 14

Cluster characteristics:

size	3375
size_real	3375
ecount	139030
supercluster	14
annotations_summary
pair_completeness	0.605613701236917
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0183703703703704
satellite_probability	4.56733119665516e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	6
S5	19
S4	19
S7	4
S9	6
S6	33
S2	1020
S1	1180
S3	1080

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	0.5	1.0	0.5	1	1.5	71.5	70.0	61.0
S5	0.5	7.0	10.5	0.5	0	26.0	84.0	104.0	85.5
S4	1.0	10.5	32.0	0.0	0	58.0	20.5	18.5	14.0
S7	0.5	0.5	0.0	1.0	0	0.0	58.0	61.5	59.0
S9	1.0	0.0	0.0	0.0	1	0.0	64.0	74.0	64.0
S6	1.5	26.0	58.0	0.0	0	112.0	13.0	16.5	11.0
S2	71.5	84.0	20.5	58.0	64	13.0	13300.0	15400.0	14200.0
S1	70.0	104.0	18.5	61.5	74	16.5	15400.0	17600.0	16100.0
S3	61.0	85.5	14.0	59.0	64	11.0	14200.0	16100.0	14600.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	1.060	4.350	1.860	3.290	4.230	1.110	0.952	0.907
S5	1.060	9.620	29.700	1.210	0.000	47.800	0.851	0.921	0.828
S4	4.350	29.700	186.000	0.000	0.000	219.000	0.427	0.337	0.279
S7	1.860	1.210	0.000	4.270	0.000	0.000	1.030	0.959	1.010
S9	3.290	0.000	0.000	0.000	3.340	0.000	1.010	1.020	0.966
S6	4.230	47.800	219.000	0.000	0.000	275.000	0.176	0.195	0.142
S2	1.110	0.851	0.427	1.030	1.010	0.176	0.991	1.000	1.010
S1	0.952	0.921	0.337	0.959	1.020	0.195	1.000	1.000	1.000
S3	0.907	0.828	0.279	1.010	0.966	0.142	1.010	1.000	0.996

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

85	884
42	118
188	11
145	9
202	7
113	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

85	312	0.339
42	145	0.146
202	13	0.0264
145	12	0.0221
724	12	0.0283
188	8	0.0149
1720	4	0.00952
23	3	0.00194
1160	3	0.00714
2740	3	0.00716
6840	3	0.00719
17300	3	0.00721
148	2	0.00254
1160	2	0.00476
2140	2	0.00477
2270	2	0.00478
4310	2	0.0048
7360	2	0.00481
12300	2	0.00481
15100	2	0.00481
16100	2	0.00481
16800	2	0.00481
17500	2	0.00481
19200	2	0.00481
33900	2	0.00481
41700	2	0.00481
47800	2	0.00481
53400	2	0.00481
7	1	0.00054
46	1	0.000754
96	1	0.00104
110	1	0.000953
113	1	0.00126
129	1	0.00154
152	1	0.00129
168	1	0.00139
175	1	0.00164
189	1	0.00184
239	1	0.00186
275	1	0.00209
305	1	0.00223
1920	1	0.00238
3590	1	0.00239
3900	1	0.0024
4380	1	0.00241
4690	1	0.0024
5000	1	0.0024
5970	1	0.0024
6360	1	0.0024
6560	1	0.0024
7720	1	0.0024
9460	1	0.0024
11200	1	0.0024
11400	1	0.00241
12800	1	0.0024
13500	1	0.0024
14500	1	0.0024
15600	1	0.0024
15800	1	0.0024
16100	1	0.0024
17800	1	0.0024
17900	1	0.00241
18600	1	0.0024
22300	1	0.00241
28200	1	0.00241
32200	1	0.00241
33100	1	0.00241
33100	1	0.00241
36500	1	0.00241
41500	1	0.00241
43000	1	0.00241
45000	1	0.00241
46300	1	0.00241
47200	1	0.00241
47400	1	0.00241
50100	1	0.00241
52300	1	0.00241
56500	1	0.00241
69400	1	0.00241
70600	1	0.00241

CL98 ----> CL85

No. of shared pairs: :312

CL98 ----> CL42

No. of shared pairs: :145

CL98 ----> CL202

No. of shared pairs: :13

CL98 ----> CL145

No. of shared pairs: :12

CL98 ----> CL724

No. of shared pairs: :12