Cluster no. 97

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Cluster is part of supercluster: 6

Cluster characteristics:

size	3417
size_real	3417
ecount	78832
supercluster	6
annotations_summary	9.57% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG 6.56% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT 0.18% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness	0.809851694915254
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0254609306409131
satellite_probability	6.54841437066171e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	4
S5	1140
S4	1110
S7	0
S9	3
S6	1160
S2	2
S1	0
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S9	S6	S2	S3
S8	0.0	19.0	23.5	0.0	21.5	0.0	0.0
S5	19.0	9090.0	8650.0	9.0	8840.0	28.5	19.5
S4	23.5	8650.0	9190.0	9.5	8360.0	13.0	18.0
S7	0.0	0.0	0.0	0.0	0.0	0.0	0.0
S9	0.0	9.0	9.5	0.0	12.0	0.0	0.0
S6	21.5	8840.0	8360.0	12.0	8430.0	23.5	16.5
S2	0.0	28.5	13.0	0.0	23.5	1.0	0.0
S1	0.0	0.0	0.0	0.0	0.0	0.0	0.0
S3	0.0	19.5	18.0	0.0	16.5	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.878	1.100	NA	0.000	1.030	0.000	NA	0.000
S5	0.878	1.010	0.974	NA	0.873	1.020	1.280	NA	1.070
S4	1.100	0.974	1.050	NA	0.935	0.976	0.591	NA	1.000
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	0.000	0.873	0.935	NA	0.000	1.210	0.000	NA	0.000
S6	1.030	1.020	0.976	NA	1.210	1.010	1.090	NA	0.937
S2	0.000	1.280	0.591	NA	0.000	1.090	18.100	NA	0.000
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	0.000	1.070	1.000	NA	0.000	0.937	0.000	NA	0.000

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Athila Ty3-GAG Athila Ty3-GAG 4 0.0012

TatV Ty3-GAG TatV Ty3-GAG 327 0.0957

CRM Ty3-INT CRM Ty3-INT 6 0.0018

TatV Ty3-PROT TatV Ty3-PROT 224 0.0656

clusters with similarity:

Cluster	Number of similarity hits

61	167
94	84
16	51
56	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

61	135	0.133
16	93	0.134
3720	6	0.0328
14	4	0.00224
1	2	0.00105
6	2	0.000709
10	2	0.00114
29	2	0.00164
56	2	0.0025
16500	2	0.011
40900	2	0.0111
58600	2	0.0111
2	1	0.000579
3	1	0.000333
13	1	0.000587
34	1	0.000737
44	1	0.000966
66	1	0.00103
67	1	0.000966
70	1	0.00199
81	1	0.00182
95	1	0.00138
128	1	0.00125
132	1	0.00334
149	1	0.00335
158	1	0.00426
195	1	0.00338
342	1	0.00459
10200	1	0.00554
19300	1	0.00552
26900	1	0.00554

CL97 ----> CL61

No. of shared pairs: :135

CL97 ----> CL16

No. of shared pairs: :93