Cluster no. 95

Cluster no. 95

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Cluster is part of supercluster: 10

Cluster characteristics:

size	3557
size_real	3557
ecount	304823
supercluster	10
annotations_summary	0.22% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.03% 45S_rDNA/25S_rDNA 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness	0.52989247311828
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00534157998313185
satellite_probability	6.30293069200862e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3
S5	1260
S4	1180
S7	1
S9	0
S6	1110
S2	4
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	166.0	138.0	0.5	0	130.0	0.0	0	0
S5	166.0	41100.0	36000.0	65.5	0	34600.0	15.5	0	0
S4	138.0	36000.0	31500.0	49.5	0	30200.0	19.5	0	0
S7	0.5	65.5	49.5	0.0	0	50.0	0.0	0	0
S9	0.0	0.0	0.0	0.0	0	0.0	0.0	0	0
S6	130.0	34600.0	30200.0	50.0	0	29300.0	18.5	0	0
S2	0.0	15.5	19.5	0.0	0	18.5	0.0	0	0
S1	0.0	0.0	0.0	0.0	0	0.0	0.0	0	0
S3	0.0	0.0	0.0	0.0	0	0.0	0.0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	1.040	0.986	2.120	NA	0.972	0.000	NA	NA
S5	1.040	0.999	1.000	1.080	NA	1.000	0.789	NA	NA
S4	0.986	1.000	1.000	0.931	NA	0.996	1.130	NA	NA
S7	2.120	1.080	0.931	0.000	NA	0.977	0.000	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	0.972	1.000	0.996	0.977	NA	1.000	1.120	NA	NA
S2	0.000	0.789	1.130	0.000	NA	1.120	0.000	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

25S_rDNA 25S_rDNA 1 0.00028

Tekay Ty3-GAG Tekay Ty3-GAG 8 0.00225

Reina Ty3-INT Reina Ty3-INT 1 0.00028

Tekay Ty3-RT Tekay Ty3-RT 1 0.00028

clusters with similarity:

Cluster	Number of similarity hits

24	2460
142	364
28	39
149	31
346	3
20	1
76	1
109	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

24	382	0.328
142	92	0.125
149	40	0.0601
31	8	0.00617
556	8	0.0144
126	7	0.00732
14	6	0.00279
43	5	0.00277
89	5	0.00491
2	4	0.00191
60	4	0.00261
88	4	0.00334
346	4	0.00695
3	3	0.000891
6	3	0.000941
15	3	0.00106
28	3	0.0019
48	3	0.00197
61	3	0.00217
92	3	0.003
99	3	0.00281
4260	3	0.00545
6020	3	0.00546
1	2	0.000883
20	2	0.00137
34	2	0.00116
66	2	0.00149
73	2	0.00175
80	2	0.00155
81	2	0.00218
84	2	0.00155
90	2	0.00164
109	2	0.00198
2470	2	0.00363
6410	2	0.00364
16000	2	0.00365
28000	2	0.00365
30000	2	0.00365
36400	2	0.00365
44400	2	0.00365
50600	2	0.00365
50800	2	0.00365
61900	2	0.00365
67100	2	0.00365
68000	2	0.00365
10	1	0.00047
13	1	0.000483
16	1	0.000944
19	1	0.000443
29	1	0.000631
37	1	0.000776
39	1	0.000664
44	1	0.000713
45	1	0.000506
49	1	0.000479
52	1	0.000911
56	1	0.000857
70	1	0.00115
76	1	0.000919
87	1	0.000856
93	1	0.000832
97	1	0.00138
105	1	0.000933
108	1	0.00105
111	1	0.00137
118	1	0.001
119	1	0.00119
123	1	0.000894
141	1	0.00138
144	1	0.00134
145	1	0.00148
146	1	0.000937
181	1	0.00109
186	1	0.00153
190	1	0.00161
195	1	0.00151
208	1	0.00137
241	1	0.00161
250	1	0.00177
252	1	0.00159
266	1	0.00173
295	1	0.00171
307	1	0.00169
965	1	0.00181
1300	1	0.00181
1310	1	0.00181
1790	1	0.00181
1800	1	0.00181
3360	1	0.00182
4040	1	0.00182
5200	1	0.00182
5540	1	0.00182
5570	1	0.00182
7440	1	0.00182
8890	1	0.00182
11100	1	0.00183
14800	1	0.00182
15000	1	0.00182
15200	1	0.00182
18500	1	0.00182
21600	1	0.00183
22000	1	0.00183
25600	1	0.00183
25800	1	0.00183
29900	1	0.00183
34600	1	0.00183
34900	1	0.00183
35000	1	0.00183
35400	1	0.00183
36400	1	0.00183
41400	1	0.00183
43100	1	0.00183
47700	1	0.00183
48000	1	0.00183
61200	1	0.00183
62300	1	0.00183
62600	1	0.00183
67900	1	0.00183
70100	1	0.00183

CL95 ----> CL24

No. of shared pairs: :382

CL95 ----> CL142

No. of shared pairs: :92

CL95 ----> CL149

No. of shared pairs: :40