Cluster no. 93

Cluster no. 93

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Cluster is part of supercluster: 4

Cluster characteristics:

size	3657
size_real	3657
ecount	98353
supercluster	4
annotations_summary	0.08% organelle/mitochondria 0.05% organelle/plastid
pair_completeness	0.472222222222222
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.557560842220399
satellite_probability	0.000357553451423124
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	5
S5	1140
S4	1160
S7	4
S9	5
S6	1340
S2	2
S1	3
S3	1

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.0	19.5	22.5	0.0	0.0	26.0	0.0	0	0.0
S5	19.5	8860.0	9360.0	55.5	34.5	11300.0	1.5	37	1.5
S4	22.5	9360.0	10100.0	60.0	37.5	11700.0	2.0	44	1.0
S7	0.0	55.5	60.0	0.0	0.0	72.0	0.0	0	0.0
S9	0.0	34.5	37.5	0.0	1.0	43.0	0.0	0	0.0
S6	26.0	11300.0	11700.0	72.0	43.0	13700.0	3.0	39	0.5
S2	0.0	1.5	2.0	0.0	0.0	3.0	1.0	0	0.0
S1	0.0	37.0	44.0	0.0	0.0	39.0	0.0	1	0.0
S3	0.0	1.5	1.0	0.0	0.0	0.5	0.0	0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	20.700	0.938	1.020	0.000	0.000	1.000	0.000	0.00	0.000
S5	0.938	0.992	0.991	0.983	0.987	1.010	0.664	1.02	1.660
S4	1.020	0.991	1.010	1.000	1.010	0.998	0.837	1.14	1.050
S7	0.000	0.983	1.000	0.000	0.000	1.020	0.000	0.00	0.000
S9	0.000	0.987	1.010	0.000	7.310	0.989	0.000	0.00	0.000
S6	1.000	1.010	0.998	1.020	0.989	0.991	1.070	0.86	0.444
S2	0.000	0.664	0.837	0.000	0.000	1.070	1750.000	0.00	0.000
S1	0.000	1.020	1.140	0.000	0.000	0.860	0.000	6.72	0.000
S3	0.000	1.660	1.050	0.000	0.000	0.444	0.000	0.00	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 3 0.00082

plastid plastid 2 0.00055

clusters with similarity:

Cluster	Number of similarity hits

1	1710
35	451
15	251
118	4
179	3
296	3
537	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

1	543	0.229
35	516	0.316
179	11	0.0119
296	9	0.0131
3	4	0.00115
6	3	0.00091
48	3	0.00184
220	3	0.00393
537	3	0.00447
6980	3	0.00456
29	2	0.00118
34	2	0.00109
37	2	0.00143
56	2	0.00157
72	2	0.00152
130	2	0.00188
8630	2	0.00304
14	1	0.000442
16	1	0.000856
39	1	0.00062
52	1	0.000829
67	1	0.000662
80	1	0.000717
81	1	0.000976
84	1	0.000714
95	1	0.000832
99	1	0.000849
118	1	0.000905
141	1	0.0012
146	1	0.00085
208	1	0.00119
240	1	0.00142
252	1	0.00136
257	1	0.00142
295	1	0.00144
315	1	0.00147
442	1	0.00148
445	1	0.00148
863	1	0.00151
1880	1	0.00152
3590	1	0.00152
3720	1	0.00152
5370	1	0.00152
12300	1	0.00152
14800	1	0.00152
15100	1	0.00152
15400	1	0.00152
32900	1	0.00152
46200	1	0.00152
48200	1	0.00152
66500	1	0.00152

CL93 ----> CL1

No. of shared pairs: :543

CL93 ----> CL35

No. of shared pairs: :516

CL93 ----> CL179

No. of shared pairs: :11