Cluster no. 91

Cluster no. 91

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Cluster is part of supercluster: 2

Cluster characteristics:

size	3693
size_real	3693
ecount	128638
supercluster	2
annotations_summary	6.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.19% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness	0.476019184652278
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00216626049282426
satellite_probability	3.21043016719236e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1220
S5	8
S4	4
S7	1200
S9	1240
S6	8
S2	11
S1	9
S3	4

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	14200.0	114.0	52.0	13300.0	14800.0	146.0	84.5	15.5	37.5
S5	114.0	1.0	0.5	104.0	110.0	1.0	0.0	0.0	0.5
S4	52.0	0.5	0.0	42.5	45.5	1.0	0.0	0.0	0.0
S7	13300.0	104.0	42.5	12400.0	13900.0	136.0	86.5	22.0	41.0
S9	14800.0	110.0	45.5	13900.0	15400.0	151.0	91.5	23.0	38.5
S6	146.0	1.0	1.0	136.0	151.0	1.0	0.5	0.0	0.5
S2	84.5	0.0	0.0	86.5	91.5	0.5	0.0	0.5	0.0
S1	15.5	0.0	0.0	22.0	23.0	0.0	0.5	0.0	0.0
S3	37.5	0.5	0.0	41.0	38.5	0.5	0.0	0.0	1.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.999	1.030	1.110	1.000	0.999	1.000	0.964	0.764	0.948
S5	1.030	1.180	1.380	1.010	0.960	0.891	0.000	0.000	1.640
S4	1.110	1.380	0.000	0.965	0.930	2.080	0.000	0.000	0.000
S7	1.000	1.010	0.965	0.996	1.000	1.000	1.050	1.160	1.110
S9	0.999	0.960	0.930	1.000	1.000	0.999	1.000	1.090	0.936
S6	1.000	0.891	2.080	1.000	0.999	0.672	0.558	0.000	1.240
S2	0.964	0.000	0.000	1.050	1.000	0.558	0.000	4.000	0.000
S1	0.764	0.000	0.000	1.160	1.090	0.000	4.000	0.000	0.000
S3	0.948	1.640	0.000	1.110	0.936	1.240	0.000	0.000	9.080

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

CRM Ty3-GAG CRM Ty3-GAG 2 0.00054

Reina Ty3-GAG Reina Ty3-GAG 7 0.00190

Tekay Ty3-GAG Tekay Ty3-GAG 227 0.06147

clusters with similarity:

Cluster	Number of similarity hits

8	7580
162	74
22	28
248	18
150	5
17	3
174	1
182	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

8	514	0.208
22	49	0.0215
248	37	0.051
5	35	0.0139
150	33	0.0413
17	28	0.0123
162	20	0.0173
139	19	0.0207
11	11	0.0058
18	10	0.00523
12	9	0.00487
65	7	0.0066
9	6	0.00443
4320	6	0.0091
36	5	0.00313
51	5	0.00268
140	5	0.00455
2770	5	0.00758
4	4	0.00178
68	4	0.00277
5340	4	0.00607
32	3	0.00241
59	3	0.00164
75	3	0.00238
78	3	0.00172
83	3	0.00291
102	3	0.00294
107	3	0.00245
203	3	0.00367
614	3	0.00448
4750	3	0.00456
54	2	0.00134
114	2	0.002
182	2	0.00242
1940	2	0.00302
3230	2	0.00304
6560	2	0.00304
8450	2	0.00305
9660	2	0.00305
10500	2	0.00304
12700	2	0.00304
15600	2	0.00304
16200	2	0.00304
24800	2	0.00305
30900	2	0.00305
36200	2	0.00305
38100	2	0.00305
53900	2	0.00305
54500	2	0.00305
21	1	0.000883
40	1	0.000815
53	1	0.000825
69	1	0.000562
79	1	0.00115
100	1	0.000923
103	1	0.0011
106	1	0.000944
124	1	0.00114
137	1	0.00127
138	1	0.00116
157	1	0.000937
163	1	0.00138
173	1	0.00116
177	1	0.0013
199	1	0.00134
227	1	0.00142
232	1	0.00128
246	1	0.00134
251	1	0.00134
263	1	0.00136
268	1	0.00143
270	1	0.00139
322	1	0.00143
347	1	0.00151
387	1	0.00149
631	1	0.0015
694	1	0.00149
800	1	0.0015
966	1	0.00151
1080	1	0.00151
1230	1	0.00152
1650	1	0.00151
2380	1	0.00152
2490	1	0.00152
3620	1	0.00152
5970	1	0.00152
7090	1	0.00152
7940	1	0.00152
8150	1	0.00152
8670	1	0.00152
8760	1	0.00152
8830	1	0.00152
10500	1	0.00152
10900	1	0.00152
11300	1	0.00152
14100	1	0.00152
14500	1	0.00152
15100	1	0.00152
15400	1	0.00152
16900	1	0.00152
17400	1	0.00152
17800	1	0.00152
18000	1	0.00152
20100	1	0.00152
21500	1	0.00152
23400	1	0.00152
24100	1	0.00152
26100	1	0.00152
27600	1	0.00152
34300	1	0.00152
34600	1	0.00152
40500	1	0.00152
51800	1	0.00152
56500	1	0.00152
56600	1	0.00152
62000	1	0.00152
62300	1	0.00152
65200	1	0.00152

CL91 ----> CL8

No. of shared pairs: :514

CL91 ----> CL22

No. of shared pairs: :49

CL91 ----> CL248

No. of shared pairs: :37

CL91 ----> CL5

No. of shared pairs: :35

CL91 ----> CL150

No. of shared pairs: :33

CL91 ----> CL17

No. of shared pairs: :28

CL91 ----> CL162

No. of shared pairs: :20

CL91 ----> CL139

No. of shared pairs: :19

CL91 ----> CL11

No. of shared pairs: :11

CL91 ----> CL18

No. of shared pairs: :10