Cluster no. 86

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Cluster is part of supercluster: 10

Cluster characteristics:

size 3830
size_real 3830
ecount 163325
supercluster 10
annotations_summary 29.66% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
5.77% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
4.67% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.18% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.03% organelle/plastid
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.585264900662252
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00130548302872063
satellite_probability 8.75468016753053e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 1330
S4 1230
S7 5
S9 5
S6 1240
S2 5
S1 2
S3 7
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 28.0 33.5 0.0 0.0 25.0 0.0 0.0 1.0
S5 28.0 18100.0 18500.0 38.5 57.0 17600.0 6.5 23.5 93.5
S4 33.5 18500.0 18700.0 51.0 66.0 17800.0 6.5 21.0 126.0
S7 0.0 38.5 51.0 0.0 0.5 40.0 0.0 0.0 0.5
S9 0.0 57.0 66.0 0.5 1.0 46.0 0.0 0.0 0.5
S6 25.0 17600.0 17800.0 40.0 46.0 17200.0 6.5 23.5 110.0
S2 0.0 6.5 6.5 0.0 0.0 6.5 0.0 0.0 0.0
S1 0.0 23.5 21.0 0.0 0.0 23.5 0.0 0.0 0.0
S3 1.0 93.5 126.0 0.5 0.5 110.0 0.0 0.0 1.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.960 1.130 0.000 0.000 0.883 0.000 0.000 5.610
S5 0.960 1.000 1.000 0.885 1.000 0.999 1.000 1.040 0.844
S4 1.130 1.000 0.999 1.160 1.140 0.997 0.986 0.913 1.120
S7 0.000 0.885 1.160 0.000 3.660 0.947 0.000 0.000 1.880
S9 0.000 1.000 1.140 3.660 5.590 0.831 0.000 0.000 1.440
S6 0.883 0.999 0.997 0.947 0.831 1.000 1.030 1.070 1.020
S2 0.000 1.000 0.986 0.000 0.000 1.030 0.000 0.000 0.000
S1 0.000 1.040 0.913 0.000 0.000 1.070 0.000 0.000 0.000
S3 5.610 0.844 1.120 1.880 1.440 1.020 0.000 0.000 1.480

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00026
Tekay Ty3-CHDII Tekay Ty3-CHDII 179 0.04674
CRM Ty3-INT CRM Ty3-INT 1 0.00026
Reina Ty3-INT Reina Ty3-INT 1 0.00026
Tekay Ty3-INT Tekay Ty3-INT 1136 0.29661
Reina Ty3-RH Reina Ty3-RH 7 0.00183
Tekay Ty3-RH Tekay Ty3-RH 221 0.05770

clusters with similarity:

Cluster Number of similarity hits
142 621
112 98
149 63
183 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
112 229 0.274
142 88 0.128
149 57 0.0919
34 5 0.00298
3 4 0.0012
10 4 0.00192
16 4 0.00394
28 4 0.0026
71 4 0.0028
117 4 0.0046
2 3 0.00147
31 3 0.0024
49 3 0.00147
88 3 0.0026
92 3 0.00314
123 3 0.0028
12200 3 0.00597
12400 3 0.00597
14200 3 0.00597
1 2 0.000901
14 2 0.000949
19 2 0.000905
24 2 0.00179
29 2 0.0013
52 2 0.0019
55 2 0.00164
61 2 0.00149
70 2 0.00243
80 2 0.00161
82 2 0.00177
84 2 0.0016
87 2 0.00178
89 2 0.00205
99 2 0.00196
105 2 0.00195
120 2 0.00222
128 2 0.00178
130 2 0.00221
377 2 0.00377
5330 2 0.00397
5750 2 0.00397
9820 2 0.00398
10300 2 0.00398
10400 2 0.00398
11000 2 0.00398
11300 2 0.00398
12900 2 0.00398
32500 2 0.00398
49800 2 0.00398
59900 2 0.00398
68200 2 0.00398
68300 2 0.00398
6 1 0.000318
13 1 0.000494
15 1 0.000361
37 1 0.000804
39 1 0.000685
43 1 0.000569
44 1 0.000737
56 1 0.000891
60 1 0.000673
66 1 0.000774
81 1 0.00115
90 1 0.000854
118 1 0.00105
119 1 0.00126
121 1 0.0013
122 1 0.00144
126 1 0.0011
133 1 0.00174
138 1 0.00142
151 1 0.00108
155 1 0.00144
159 1 0.00125
179 1 0.0013
184 1 0.00129
236 1 0.0017
242 1 0.00162
298 1 0.00179
380 1 0.00194
499 1 0.00195
1360 1 0.00197
1440 1 0.00198
1510 1 0.00197
1530 1 0.00197
1790 1 0.00198
2060 1 0.00197
2460 1 0.00198
3070 1 0.00198
3940 1 0.00199
4400 1 0.00199
5940 1 0.00199
6060 1 0.00199
6370 1 0.00199
7670 1 0.00199
8110 1 0.00199
11700 1 0.00199
13000 1 0.00199
13900 1 0.00199
14400 1 0.00199
17700 1 0.00199
18400 1 0.00199
19000 1 0.00199
19300 1 0.00199
23600 1 0.00199
24400 1 0.00199
25000 1 0.00199
25600 1 0.00199
25700 1 0.00199
32800 1 0.00199
33100 1 0.00199
34900 1 0.00199
35500 1 0.00199
36000 1 0.00199
36100 1 0.00199
37700 1 0.00199
39600 1 0.00199
41700 1 0.00199
42000 1 0.00199
42700 1 0.00199
42700 1 0.00199
42900 1 0.00199
43300 1 0.00199
45400 1 0.00199
47400 1 0.00199
47800 1 0.00199
49200 1 0.00199
53700 1 0.00199
55700 1 0.00199
55800 1 0.00199
56900 1 0.00199
57200 1 0.00199
58200 1 0.00199
58600 1 0.00199
58600 1 0.00199
58700 1 0.00199
60500 1 0.00199
63500 1 0.00199
66600 1 0.00199
68000 1 0.00199
70200 1 0.00199

CL86 ----> CL112

image

No. of shared pairs: :229

CL86 ----> CL142

image

No. of shared pairs: :88

CL86 ----> CL149

image

No. of shared pairs: :57