Cluster no. 85

Cluster no. 85

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Cluster is part of supercluster: 14

Cluster characteristics:

size	3889
size_real	3889
ecount	106035
supercluster	14
annotations_summary	5.14% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.03% Class_I/LINE:LINE-RT
pair_completeness	0.586699306405549
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0298277192080226
satellite_probability	1.15545040757781e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	5
S5	2
S4	6
S7	5
S9	2
S6	4
S2	1220
S1	1350
S3	1300

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	0.0	0.0	0.0	0.0	0.0	41.5	45.0	43.0
S5	0.0	0.0	0.0	0.0	0.0	0.0	23.5	27.0	13.5
S4	0.0	0.0	3.0	0.5	0.0	2.0	67.5	93.5	66.0
S7	0.0	0.0	0.5	1.0	0.0	0.0	52.0	52.0	51.0
S9	0.0	0.0	0.0	0.0	0.0	0.0	4.0	3.5	0.5
S6	0.0	0.0	2.0	0.0	0.0	0.0	32.5	38.5	29.5
S2	41.5	23.5	67.5	52.0	4.0	32.5	11200.0	12100.0	11000.0
S1	45.0	27.0	93.5	52.0	3.5	38.5	12100.0	13200.0	11800.0
S3	43.0	13.5	66.0	51.0	0.5	29.5	11000.0	11800.0	10700.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.000	0.000	0.000	0.000	0.000	0.987	0.988	1.050
S5	0.000	0.000	0.000	0.000	0.000	0.000	1.130	1.200	0.665
S4	0.000	0.000	5.880	1.460	0.000	8.900	0.894	1.140	0.895
S7	0.000	0.000	1.460	4.330	0.000	0.000	1.020	0.945	1.030
S9	0.000	0.000	0.000	0.000	0.000	0.000	1.540	1.240	0.197
S6	0.000	0.000	8.900	0.000	0.000	0.000	0.977	1.070	0.907
S2	0.987	1.130	0.894	1.020	1.540	0.977	0.999	0.997	1.000
S1	0.988	1.200	1.140	0.945	1.240	1.070	0.997	1.000	0.998
S3	1.050	0.665	0.895	1.030	0.197	0.907	1.000	0.998	0.999

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-RT LINE LINE-RT 1 0.00026

CRM Ty3-GAG CRM Ty3-GAG 6 0.00154

Reina Ty3-GAG Reina Ty3-GAG 1 0.00026

Tekay Ty3-GAG Tekay Ty3-GAG 200 0.05143

TatV Ty3-INT TatV Ty3-INT 1 0.00026

clusters with similarity:

Cluster	Number of similarity hits

98	884
188	74
42	63
189	58
183	14
202	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

98	312	0.339
42	118	0.108
188	70	0.111
189	44	0.0691
183	18	0.0305
202	13	0.0223
7	11	0.00566
30	7	0.00462
57	6	0.0046
38	5	0.00326
46	5	0.00353
137	4	0.00624
175	4	0.00569
210	4	0.00559
5320	4	0.00785
27	3	0.00218
58	3	0.00277
64	3	0.00225
77	3	0.00403
110	3	0.00263
125	3	0.00302
23	2	0.00122
96	2	0.0019
100	2	0.00214
168	2	0.00246
196	2	0.00302
243	2	0.00338
332	2	0.00379
937	2	0.0039
8750	2	0.00393
13100	2	0.00394
15200	2	0.00394
15800	2	0.00394
17400	2	0.00394
39800	2	0.00394
50100	2	0.00394
21	1	0.00102
74	1	0.0012
113	1	0.00113
116	1	0.00118
124	1	0.00137
131	1	0.00118
140	1	0.00105
143	1	0.00108
148	1	0.00114
153	1	0.0011
158	1	0.00178
170	1	0.00151
182	1	0.00147
222	1	0.00166
228	1	0.00171
239	1	0.00159
249	1	0.00185
340	1	0.00186
413	1	0.0019
1060	1	0.00194
1320	1	0.00195
1840	1	0.00197
2030	1	0.00195
2130	1	0.00195
2140	1	0.00195
2180	1	0.00196
3150	1	0.00196
4320	1	0.00196
4700	1	0.00196
6640	1	0.00197
6870	1	0.00197
7770	1	0.00197
8690	1	0.00197
9550	1	0.00197
10000	1	0.00197
14700	1	0.00197
17700	1	0.00197
27800	1	0.00197
32900	1	0.00197
33600	1	0.00197
36900	1	0.00197
37400	1	0.00197
39000	1	0.00197
42400	1	0.00197
44100	1	0.00197
51400	1	0.00197
58600	1	0.00197
61300	1	0.00197
65200	1	0.00197

CL85 ----> CL98

No. of shared pairs: :312

CL85 ----> CL42

No. of shared pairs: :118

CL85 ----> CL188

No. of shared pairs: :70

CL85 ----> CL189

No. of shared pairs: :44

CL85 ----> CL183

No. of shared pairs: :18

CL85 ----> CL202

No. of shared pairs: :13

CL85 ----> CL7

No. of shared pairs: :11