Cluster no. 84

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Cluster is part of supercluster: 4

Cluster characteristics:

size 3897
size_real 3897
ecount 298447
supercluster 4
annotations_summary 0.03% Class_II/Subclass_2/Helitron:Helitron-HEL2
pair_completeness 0.446547884187082
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00410572235052605
satellite_probability 4.28848727092841e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 1300
S4 1350
S7 3
S9 3
S6 1230
S2 3
S1 0
S3 5
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 1 1 0.0 0.0 0.0 0.0 0 0.0
S5 1 30800 34100 65.0 102.0 30400.0 114.0 0 116.0
S4 1 34100 37700 76.0 122.0 34000.0 120.0 0 122.0
S7 0 65 76 0.0 0.0 64.0 0.5 0 0.5
S9 0 102 122 0.0 0.0 94.5 0.5 0 0.0
S6 0 30400 34000 64.0 94.5 30400.0 125.0 0 146.0
S2 0 114 120 0.5 0.5 125.0 0.0 0 1.5
S1 0 0 0 0.0 0.0 0.0 0.0 0 0.0
S3 0 116 122 0.5 0.0 146.0 1.5 0 1.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.00 1.560 1.400 0.000 0.000 0.000 0.000 NA 0.000
S5 1.56 1.000 1.000 0.984 0.995 0.996 0.987 NA 0.935
S4 1.40 1.000 0.998 1.040 1.070 1.000 0.929 NA 0.886
S7 0.00 0.984 1.040 0.000 0.000 0.974 2.000 NA 1.860
S9 0.00 0.995 1.070 0.000 0.000 0.931 1.300 NA 0.000
S6 0.00 0.996 1.000 0.974 0.931 1.000 1.080 NA 1.180
S2 0.00 0.987 0.929 2.000 1.300 1.080 0.000 NA 3.190
S1 NA NA NA NA NA NA NA NA NA
S3 0.00 0.935 0.886 1.860 0.000 1.180 3.190 NA 1.980

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Helitron Helitron-HEL2 Helitron Helitron-HEL2 1 0.00026

clusters with similarity:

Cluster Number of similarity hits
1 1000
151 564
220 43
80 13
48 1
73 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1 565 0.229
151 260 0.221
220 46 0.0539
6 8 0.00236
48 7 0.00407
80 6 0.00404
2 5 0.00218
3 5 0.0014
15 5 0.00166
29 5 0.0028
61 5 0.00316
13 4 0.00176
31 4 0.00268
47 4 0.00236
49 4 0.00175
99 4 0.00316
10 3 0.00129
20 3 0.00181
26 3 0.00179
37 3 0.00202
52 3 0.00231
87 3 0.00219
130 3 0.00261
141 3 0.00325
159 3 0.00287
1850 3 0.00399
5630 3 0.00401
14 2 0.00085
19 2 0.000815
24 2 0.00147
28 2 0.00112
33 2 0.000799
34 2 0.00104
41 2 0.0015
44 2 0.00125
45 2 0.000919
60 2 0.00116
63 2 0.00177
67 2 0.00125
73 2 0.00149
82 2 0.00145
86 2 0.0016
88 2 0.00143
92 2 0.00167
94 2 0.00185
95 2 0.00155
126 2 0.00173
135 2 0.00207
142 2 0.00214
149 2 0.00231
1520 2 0.00266
2010 2 0.00266
2620 2 0.00267
7290 2 0.00268
8700 2 0.00268
18300 2 0.00268
38300 2 0.00268
41300 2 0.00268
41700 2 0.00268
45400 2 0.00268
70900 2 0.00268
25 1 0.000667
35 1 0.000581
39 1 0.000587
43 1 0.000499
55 1 0.000684
56 1 0.000732
62 1 0.000859
70 1 0.000936
71 1 0.000597
76 1 0.000777
89 1 0.000821
93 1 0.000714
112 1 0.000926
115 1 0.000693
118 1 0.000837
121 1 0.000988
122 1 0.00106
123 1 0.000759
132 1 0.00116
138 1 0.00105
146 1 0.00079
181 1 0.000895
194 1 0.00119
218 1 0.00132
254 1 0.00125
266 1 0.00129
361 1 0.00131
399 1 0.00131
434 1 0.00132
541 1 0.0013
582 1 0.00133
628 1 0.00132
1050 1 0.00132
1230 1 0.00133
1410 1 0.00133
1490 1 0.00134
1660 1 0.00133
3480 1 0.00133
3710 1 0.00134
3920 1 0.00134
4350 1 0.00134
4470 1 0.00134
5740 1 0.00134
7350 1 0.00134
7480 1 0.00134
7780 1 0.00134
8180 1 0.00134
9870 1 0.00134
10300 1 0.00134
11000 1 0.00134
13700 1 0.00134
13700 1 0.00134
13800 1 0.00134
14700 1 0.00134
18000 1 0.00134
18200 1 0.00134
21000 1 0.00134
23600 1 0.00134
24400 1 0.00134
25700 1 0.00134
26900 1 0.00134
32700 1 0.00134
34900 1 0.00134
37100 1 0.00134
38700 1 0.00134
41000 1 0.00134
41400 1 0.00134
45700 1 0.00134
53100 1 0.00134
59800 1 0.00134
60100 1 0.00134
70200 1 0.00134

CL84 ----> CL1

image

No. of shared pairs: :565

CL84 ----> CL151

image

No. of shared pairs: :260

CL84 ----> CL220

image

No. of shared pairs: :46