Cluster no. 83

Cluster no. 83

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Cluster is part of supercluster: 13

Cluster characteristics:

size	3904
size_real	3904
ecount	121893
supercluster	13
annotations_summary	0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.03% Class_I/LINE:LINE-RT 0.03% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
pair_completeness	0.677696605070907
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00435450819672131
satellite_probability	2.29499556110385e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1300
S5	6
S4	5
S7	1220
S9	1340
S6	6
S2	8
S1	3
S3	5

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	13100.0	63.5	81.5	12600.0	13800.0	36.5	96.5	11.5	58.5
S5	63.5	0.0	0.5	65.5	69.0	0.0	1.0	0.0	0.5
S4	81.5	0.5	2.0	66.5	71.0	0.0	0.5	0.0	0.0
S7	12600.0	65.5	66.5	12300.0	13500.0	31.5	97.0	12.5	55.5
S9	13800.0	69.0	71.0	13500.0	14700.0	26.5	113.0	10.0	66.0
S6	36.5	0.0	0.0	31.5	26.5	0.0	0.0	0.0	0.5
S2	96.5	1.0	0.5	97.0	113.0	0.0	0.0	0.0	0.5
S1	11.5	0.0	0.0	12.5	10.0	0.0	0.0	1.0	0.0
S3	58.5	0.5	0.0	55.5	66.0	0.5	0.5	0.0	1.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.000	0.971	1.120	0.997	0.998	1.180	0.957	1.000	0.980
S5	0.971	0.000	1.370	1.030	0.993	0.000	1.980	0.000	1.670
S4	1.120	1.370	4.950	0.945	0.921	0.000	0.890	0.000	0.000
S7	0.997	1.030	0.945	1.000	1.000	1.050	0.992	1.130	0.959
S9	0.998	0.993	0.921	1.000	1.000	0.803	1.050	0.822	1.040
S6	1.180	0.000	0.000	1.050	0.803	0.000	0.000	0.000	3.520
S2	0.957	1.980	0.890	0.992	1.050	0.000	0.000	0.000	1.080
S1	1.000	0.000	0.000	1.130	0.822	0.000	0.000	99.500	0.000
S3	0.980	1.670	0.000	0.959	1.040	3.520	1.080	0.000	3.660

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-RT LINE LINE-RT 1 0.00026

Ivana Ty1-GAG Ivana Ty1-GAG 1 0.00026

Ale Ty1-RT Ale Ty1-RT 1 0.00026

clusters with similarity:

Cluster	Number of similarity hits

21

244

clusters connected through mates:

Cluster	Number of shared read pairs	k

21	138	0.162
106	58	0.0745
8	9	0.00411
32	9	0.00932
11	8	0.00495
78	5	0.00341
6210	5	0.0132
17	4	0.00201
4	3	0.00152
12	3	0.00192
18	3	0.00184
22	3	0.0015
54	3	0.00248
91	3	0.00291
3560	3	0.00792
10000	3	0.00796
5	2	0.000895
36	2	0.00152
40	2	0.00211
53	2	0.00215
69	2	0.00134
79	2	0.0034
100	2	0.00249
102	2	0.0027
139	2	0.00314
1690	2	0.00527
4020	2	0.00528
12500	2	0.00531
12900	2	0.00531
16800	2	0.00531
23900	2	0.00532
31800	2	0.00532
34900	2	0.00532
38700	2	0.00532
45100	2	0.00532
48500	2	0.00532
50800	2	0.00532
51700	2	0.00532
53100	2	0.00532
62700	2	0.00532
9	1	0.000932
59	1	0.000646
65	1	0.00128
68	1	0.000859
104	1	0.00178
107	1	0.00106
114	1	0.00139
122	1	0.00176
134	1	0.00232
138	1	0.00173
157	1	0.00127
187	1	0.00243
197	1	0.00247
199	1	0.00213
209	1	0.002
227	1	0.00237
246	1	0.00214
248	1	0.00225
253	1	0.0023
263	1	0.00219
277	1	0.00245
379	1	0.00249
1030	1	0.00261
2930	1	0.00265
3690	1	0.00265
3780	1	0.00265
4280	1	0.00266
7840	1	0.00266
9000	1	0.00265
9170	1	0.00266
11300	1	0.00266
14000	1	0.00266
14700	1	0.00266
15200	1	0.00266
15200	1	0.00266
15700	1	0.00266
15700	1	0.00266
17000	1	0.00266
22200	1	0.00266
27300	1	0.00266
28700	1	0.00266
29800	1	0.00266
31000	1	0.00266
31100	1	0.00266
33000	1	0.00266
34100	1	0.00266
34600	1	0.00266
36100	1	0.00266
36100	1	0.00266
37100	1	0.00266
39500	1	0.00266
41800	1	0.00266
42600	1	0.00266
44800	1	0.00266
48300	1	0.00266
50900	1	0.00266
50900	1	0.00266
53000	1	0.00266
60000	1	0.00266
64900	1	0.00266
64900	1	0.00266
66700	1	0.00266
67100	1	0.00266
67100	1	0.00266
69500	1	0.00266

CL83 ----> CL21

No. of shared pairs: :138

CL83 ----> CL106

No. of shared pairs: :58