Cluster no. 82

Cluster no. 82

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Cluster is part of supercluster: 1

Cluster characteristics:

size	3927
size_real	3927
ecount	48191
supercluster	1
annotations_summary	0.13% organelle/plastid
pair_completeness	0.513294797687861
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00560224089635854
satellite_probability	7.09052497171184e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2
S5	1230
S4	1370
S7	3
S9	5
S6	1310
S2	3
S1	2
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	3.0	5.0	0.0	0.0	5.0	0.0	0.0	0
S5	3	5000.0	5470.0	11.5	22.0	4910.0	10.0	6.5	1
S4	5	5470.0	6050.0	7.5	33.0	5510.0	9.0	6.0	2
S7	0	11.5	7.5	0.0	0.0	7.0	0.0	0.0	0
S9	0	22.0	33.0	0.0	0.0	26.5	0.0	0.0	0
S6	5	4910.0	5510.0	7.0	26.5	5020.0	12.5	5.5	2
S2	0	10.0	9.0	0.0	0.0	12.5	0.0	0.0	0
S1	0	6.5	6.0	0.0	0.0	5.5	0.0	0.0	0
S3	0	1.0	2.0	0.0	0.0	2.0	0.0	0.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.721	1.080	0.000	0.000	1.200	0.000	0.00	0.000
S5	0.721	1.010	1.000	1.380	0.843	0.989	0.992	1.13	0.625
S4	1.080	1.000	0.998	0.813	1.140	1.000	0.805	0.94	1.130
S7	0.000	1.380	0.813	0.000	0.000	0.837	0.000	0.00	0.000
S9	0.000	0.843	1.140	0.000	0.000	1.010	0.000	0.00	0.000
S6	1.200	0.989	1.000	0.837	1.010	1.010	1.230	0.95	1.240
S2	0.000	0.992	0.805	0.000	0.000	1.230	0.000	0.00	0.000
S1	0.000	1.130	0.940	0.000	0.000	0.950	0.000	0.00	0.000
S3	0.000	0.625	1.130	0.000	0.000	1.240	0.000	0.00	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 5 0.0013

clusters with similarity:

Cluster	Number of similarity hits

19	232
26	60
185	56
184	3
34	1
55	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

19	325	0.139
185	68	0.0748
26	57	0.0366
55	30	0.0222
20	24	0.0156
34	13	0.00719
534	12	0.0186
25	9	0.0065
184	8	0.00885
3	7	0.00203
14	5	0.00223
29	5	0.00299
982	5	0.00781
48	4	0.00249
3010	4	0.00631
6580	4	0.00631
7060	4	0.00631
1	3	0.00128
6	3	0.000916
2430	3	0.00472
3990	3	0.00472
4820	3	0.00473
5400	3	0.00473
9160	3	0.00474
12200	3	0.00474
13200	3	0.00474
13900	3	0.00474
43	2	0.00106
47	2	0.00126
80	2	0.00146
84	2	0.00145
86	2	0.00177
87	2	0.0016
90	2	0.00154
141	2	0.00248
3600	2	0.00315
3620	2	0.00315
3740	2	0.00316
11900	2	0.00316
12100	2	0.00316
14300	2	0.00316
14500	2	0.00316
16000	2	0.00316
16400	2	0.00316
22500	2	0.00316
36000	2	0.00316
38700	2	0.00316
58100	2	0.00316
63200	2	0.00316
2	1	0.000459
13	1	0.000464
24	1	8e-04
28	1	6e-04
31	1	0.000724
33	1	0.000418
37	1	0.000728
45	1	0.000485
56	1	0.000798
67	1	0.000672
109	1	0.000914
122	1	0.00121
144	1	0.0012
160	1	0.00149
178	1	0.00122
241	1	0.00142
317	1	0.00152
404	1	0.00153
1790	1	0.00157
2100	1	0.00158
5160	1	0.00158
5310	1	0.00158
6440	1	0.00158
6490	1	0.00158
8220	1	0.00158
9300	1	0.00158
9830	1	0.00158
10900	1	0.00158
11900	1	0.00158
12500	1	0.00158
12600	1	0.00158
13800	1	0.00158
14500	1	0.00158
14900	1	0.00158
15200	1	0.00158
18300	1	0.00158
18300	1	0.00158
22200	1	0.00158
23400	1	0.00158
26500	1	0.00158
29600	1	0.00158
29600	1	0.00158
30400	1	0.00158
37100	1	0.00158
40400	1	0.00158
41700	1	0.00158
42200	1	0.00158
49700	1	0.00158
50200	1	0.00158
51900	1	0.00158
53500	1	0.00158
56300	1	0.00158
57500	1	0.00158
57600	1	0.00158
63500	1	0.00158
63900	1	0.00158
64600	1	0.00158
65900	1	0.00158
68800	1	0.00158

CL82 ----> CL19

No. of shared pairs: :325

CL82 ----> CL185

No. of shared pairs: :68

CL82 ----> CL26

No. of shared pairs: :57

CL82 ----> CL55

No. of shared pairs: :30

CL82 ----> CL20

No. of shared pairs: :24

CL82 ----> CL34

No. of shared pairs: :13

CL82 ----> CL534

No. of shared pairs: :12