Cluster no. 81

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Cluster is part of supercluster: 6

Cluster characteristics:

size 3948
size_real 3948
ecount 35305
supercluster 6
annotations_summary 0.03% Class_I/LINE:LINE-ENDO
pair_completeness 0.685019206145967
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0220364741641337
satellite_probability 1.69778801131436e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 4
S5 1330
S4 1360
S7 5
S9 4
S6 1240
S2 6
S1 2
S3 2
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 13.5 17.5 0.0 0.0 13.0 0.0 0.0 0.0
S5 13.5 3750.0 4020.0 4.0 10.5 3610.0 15.0 9.0 4.0
S4 17.5 4020.0 4560.0 3.0 7.0 3950.0 21.0 8.5 2.0
S7 0.0 4.0 3.0 1.0 0.0 3.5 0.0 0.0 0.0
S9 0.0 10.5 7.0 0.0 0.0 8.0 0.0 0.0 0.0
S6 13.0 3610.0 3950.0 3.5 8.0 3510.0 13.5 7.5 3.5
S2 0.0 15.0 21.0 0.0 0.0 13.5 2.0 0.0 0.0
S1 0.0 9.0 8.5 0.0 0.0 7.5 0.0 0.0 0.5
S3 0.0 4.0 2.0 0.0 0.0 3.5 0.0 0.5 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.947 1.120 0.000 0.000 0.938 0.000 0.000 0.000
S5 0.947 1.010 0.986 1.070 1.270 1.000 0.899 1.090 1.230
S4 1.120 0.986 1.020 0.732 0.770 0.996 1.140 0.935 0.561
S7 0.000 1.070 0.732 267.000 0.000 0.966 0.000 0.000 0.000
S9 0.000 1.270 0.770 0.000 0.000 0.996 0.000 0.000 0.000
S6 0.938 1.000 0.996 0.966 0.996 1.000 0.832 0.934 1.110
S2 0.000 0.899 1.140 0.000 0.000 0.832 26.600 0.000 0.000
S1 0.000 1.090 0.935 0.000 0.000 0.934 0.000 0.000 69.200
S3 0.000 1.230 0.561 0.000 0.000 1.110 0.000 69.200 0.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-ENDO LINE LINE-ENDO 1 0.00025

clusters with similarity:

Cluster Number of similarity hits
61 44
122 2
111 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
61 160 0.133
122 44 0.0782
10 5 0.00256
2510 5 0.0134
3400 5 0.0134
6250 5 0.0135
6 4 0.00133
916 4 0.0106
1470 4 0.0107
4070 4 0.0107
5670 4 0.0108
7780 4 0.0108
14 3 0.00152
111 3 0.00542
2420 3 0.00802
2550 3 0.00806
9750 3 0.00809
17500 3 0.0081
3 2 0.000627
47 2 0.00152
67 2 0.00163
95 2 0.00218
117 2 0.00271
141 2 0.00367
4060 2 0.00538
5080 2 0.00539
5170 2 0.00538
7150 2 0.0054
8560 2 0.00541
17200 2 0.0054
21100 2 0.00541
25100 2 0.00541
28500 2 0.00541
31200 2 0.00541
33400 2 0.00541
33900 2 0.00541
36700 2 0.00541
37300 2 0.00541
47200 2 0.00541
54800 2 0.00541
56700 2 0.00541
61900 2 0.00541
62400 2 0.00541
65600 2 0.00541
66600 2 0.00541
67700 2 0.00541
68300 2 0.00541
70500 2 0.00541
13 1 0.000529
15 1 0.000379
16 1 0.00113
20 1 0.000781
24 1 0.00101
29 1 0.00071
31 1 0.000894
35 1 0.000743
39 1 0.000753
41 1 0.00104
45 1 0.000555
48 1 0.000745
49 1 0.000524
55 1 0.000921
60 1 0.000739
62 1 0.00127
72 1 0.000973
80 1 0.000902
86 1 0.00115
88 1 0.000979
90 1 0.000962
93 1 0.000976
97 1 0.00182
118 1 0.00122
121 1 0.00157
126 1 0.00128
130 1 0.00129
142 1 0.00179
151 1 0.00125
216 1 0.00203
278 1 0.00238
289 1 0.00251
295 1 0.00244
384 1 0.00259
1330 1 0.00268
1500 1 0.00267
3160 1 0.00269
3210 1 0.0027
3810 1 0.00268
3820 1 0.00269
4200 1 0.00268
6300 1 0.0027
6460 1 0.00269
7160 1 0.0027
7980 1 0.0027
8330 1 0.0027
10600 1 0.0027
10700 1 0.0027
11500 1 0.00271
15400 1 0.0027
16400 1 0.00271
17100 1 0.0027
19200 1 0.0027
21700 1 0.0027
22000 1 0.0027
25600 1 0.0027
26200 1 0.0027
26800 1 0.0027
26800 1 0.0027
27200 1 0.0027
28800 1 0.0027
34300 1 0.0027
36000 1 0.0027
37800 1 0.0027
39300 1 0.0027
40500 1 0.0027
44400 1 0.0027
45700 1 0.0027
48800 1 0.0027
59600 1 0.0027
61200 1 0.0027
61600 1 0.0027
64200 1 0.0027
67400 1 0.0027
71000 1 0.0027

CL81 ----> CL61

image

No. of shared pairs: :160

CL81 ----> CL122

image

No. of shared pairs: :44