Cluster no. 80

Go back to cluster table

Cluster is part of supercluster: 12

Cluster characteristics:

size 3954
size_real 3954
ecount 57088
supercluster 12
annotations_summary 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
pair_completeness 0.455281560544718
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00151745068285281
satellite_probability 3.90603663686178e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2
S5 1370
S4 1290
S7 4
S9 4
S6 1280
S2 1
S1 2
S3 1
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 0.5 0.5 0.0 0.0 1.0 0.0 0.0 0.0
S5 0.5 6780.0 6320.0 35.5 5.5 6600.0 0.5 1.5 1.5
S4 0.5 6320.0 5740.0 30.5 7.0 6060.0 1.0 0.5 0.5
S7 0.0 35.5 30.5 0.0 0.0 28.0 0.0 0.0 0.0
S9 0.0 5.5 7.0 0.0 1.0 5.5 0.0 0.0 0.0
S6 1.0 6600.0 6060.0 28.0 5.5 6370.0 0.5 1.0 1.0
S2 0.0 0.5 1.0 0.0 0.0 0.5 0.0 0.0 0.0
S1 0.0 1.5 0.5 0.0 0.0 1.0 0.0 0.0 0.0
S3 0.0 1.5 0.5 0.0 0.0 1.0 0.0 0.0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.723 0.786 0.000 0.000 1.500 0.000 0.000 0.000
S5 0.723 0.993 1.010 1.090 0.837 1.000 0.723 1.450 1.450
S4 0.786 1.010 0.993 1.020 1.160 0.999 1.570 0.524 0.524
S7 0.000 1.090 1.020 0.000 0.000 0.892 0.000 0.000 0.000
S9 0.000 0.837 1.160 0.000 158.000 0.867 0.000 0.000 0.000
S6 1.500 1.000 0.999 0.892 0.867 1.000 0.749 0.998 0.998
S2 0.000 0.723 1.570 0.000 0.000 0.749 0.000 0.000 0.000
S1 0.000 1.450 0.524 0.000 0.000 0.998 0.000 0.000 0.000
S3 0.000 1.450 0.524 0.000 0.000 0.998 0.000 0.000 0.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00025
TatV Ty3-INT TatV Ty3-INT 1 0.00025
Tekay Ty3-RH Tekay Ty3-RH 1 0.00025

clusters with similarity:

Cluster Number of similarity hits
73 282
37 83
151 57
84 13
20 1
90 1
132 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
73 394 0.295
37 126 0.085
151 26 0.0222
20 14 0.00848
308 14 0.0182
6 10 0.00296
41 7 0.00527
2390 7 0.0094
84 6 0.00404
2940 6 0.00807
3 5 0.0014
659 5 0.00662
1560 5 0.0067
353 4 0.0052
630 4 0.00533
801 4 0.00532
1720 4 0.00537
2080 4 0.00537
4330 4 0.00538
1 3 0.00122
13 3 0.00133
19 3 0.00122
61 3 0.0019
295 3 0.00385
399 3 0.00397
1830 3 0.00403
2520 3 0.00403
3290 3 0.00403
5350 3 0.00404
6860 3 0.00405
7860 3 0.00404
8610 3 0.00404
14 2 0.000852
15 2 0.000664
28 2 0.00113
29 2 0.00112
35 2 0.00116
39 2 0.00118
44 2 0.00125
48 2 0.00117
60 2 0.00116
82 2 0.00146
86 2 0.00161
95 2 0.00155
99 2 0.00158
126 2 0.00174
2650 2 0.00269
3400 2 0.00269
3750 2 0.00269
3950 2 0.00269
6940 2 0.00269
7100 2 0.00269
8320 2 0.0027
11100 2 0.0027
11300 2 0.0027
13400 2 0.0027
22500 2 0.0027
32000 2 0.0027
35600 2 0.0027
50500 2 0.0027
55400 2 0.0027
58200 2 0.0027
64400 2 0.0027
69400 2 0.0027
2 1 0.000437
10 1 0.000431
24 1 0.000736
26 1 6e-04
33 1 4e-04
34 1 0.000522
43 1 0.000501
47 1 0.000592
52 1 0.000774
55 1 0.000686
67 1 0.000627
70 1 0.000941
72 1 0.000715
74 1 0.000938
76 1 0.00078
81 1 0.000902
88 1 0.000718
89 1 0.000825
90 1 0.000709
93 1 0.000717
100 1 0.000856
109 1 0.000832
112 1 0.000931
119 1 0.00097
120 1 0.000876
123 1 0.000762
128 1 0.000735
132 1 0.00116
135 1 0.00104
144 1 0.00107
146 1 0.000793
159 1 0.000963
184 1 0.000988
185 1 0.000983
211 1 0.00109
216 1 0.00116
238 1 0.00119
254 1 0.00126
404 1 0.00131
600 1 0.00134
661 1 0.00133
664 1 0.00134
897 1 0.00133
1010 1 0.00134
1140 1 0.00134
1440 1 0.00134
1470 1 0.00134
2860 1 0.00134
3590 1 0.00134
3940 1 0.00134
4040 1 0.00134
4550 1 0.00135
4730 1 0.00135
5770 1 0.00135
5980 1 0.00135
6950 1 0.00135
7120 1 0.00135
7300 1 0.00135
7480 1 0.00135
7870 1 0.00135
9050 1 0.00135
9520 1 0.00135
11600 1 0.00135
13300 1 0.00135
14100 1 0.00135
16800 1 0.00135
17800 1 0.00135
17900 1 0.00135
18700 1 0.00135
18900 1 0.00135
19000 1 0.00135
19600 1 0.00135
23300 1 0.00135
23500 1 0.00135
23500 1 0.00135
24100 1 0.00135
25400 1 0.00135
27400 1 0.00135
27600 1 0.00135
29700 1 0.00135
30200 1 0.00135
31300 1 0.00135
31600 1 0.00135
32600 1 0.00135
33900 1 0.00135
35600 1 0.00135
36400 1 0.00135
37300 1 0.00135
38200 1 0.00135
44200 1 0.00135
46000 1 0.00135
46500 1 0.00135
46700 1 0.00135
47400 1 0.00135
48100 1 0.00135
48300 1 0.00135
49000 1 0.00135
50100 1 0.00135
51300 1 0.00135
51700 1 0.00135
52000 1 0.00135
52500 1 0.00135
53000 1 0.00135
55400 1 0.00135
55800 1 0.00135
57200 1 0.00135
57300 1 0.00135
60700 1 0.00135
62800 1 0.00135
63900 1 0.00135
64200 1 0.00135
64200 1 0.00135
65400 1 0.00135
66700 1 0.00135
67300 1 0.00135
70200 1 0.00135
70300 1 0.00135

CL80 ----> CL73

image

No. of shared pairs: :394

CL80 ----> CL37

image

No. of shared pairs: :126

CL80 ----> CL151

image

No. of shared pairs: :26

CL80 ----> CL20

image

No. of shared pairs: :14

CL80 ----> CL308

image

No. of shared pairs: :14

CL80 ----> CL6

image

No. of shared pairs: :10