Cluster no. 78

Cluster no. 78

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Cluster is part of supercluster: 2

Cluster characteristics:

size	3969
size_real	3969
ecount	734489
supercluster	2
annotations_summary
pair_completeness	0.290731707317073
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0841521793902746
satellite_probability	1.47496651094401e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1300
S5	9
S4	9
S7	1310
S9	1320
S6	8
S2	4
S1	2
S3	4

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	78200.0	306.0	694.0	77100	82700	452.0	208	24.5	392.0
S5	306.0	0.0	3.0	282	307	1.5	1	0.0	1.5
S4	694.0	3.0	4.0	660	706	3.5	2	0.0	3.5
S7	77100.0	282.0	660.0	75300	81100	436.0	200	28.0	366.0
S9	82700.0	307.0	706.0	81100	86600	482.0	225	24.0	406.0
S6	452.0	1.5	3.5	436	482	1.0	1	0.0	2.0
S2	208.0	1.0	2.0	200	225	1.0	1	0.0	2.0
S1	24.5	0.0	0.0	28	24	0.0	0	0.0	0.0
S3	392.0	1.5	3.5	366	406	2.0	2	0.0	1.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.997	1.040	1.020	1.000	1.000	1.000	0.993	0.980	1.020
S5	1.040	0.000	1.180	0.975	0.990	0.885	1.280	0.000	1.040
S4	1.020	1.180	0.682	0.992	0.988	0.897	1.110	0.000	1.060
S7	1.000	0.975	0.992	0.997	1.000	0.986	0.974	1.140	0.971
S9	1.000	0.990	0.988	1.000	0.997	1.020	1.020	0.912	1.010
S6	1.000	0.885	0.897	0.986	1.020	0.385	0.833	0.000	0.907
S2	0.993	1.280	1.110	0.974	1.020	0.833	1.800	0.000	1.960
S1	0.980	0.000	0.000	1.140	0.912	0.000	0.000	0.000	0.000
S3	1.020	1.040	1.060	0.971	1.010	0.907	1.960	0.000	0.533

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

69	28300
5	27000
157	451
107	29
51	4
75	1
162	1
643	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

5	943	0.32
69	740	0.334
157	193	0.128
51	88	0.0383
107	18	0.0108
8	10	0.00344
4	9	0.00335
22	9	0.00331
83	5	0.00341
1530	5	0.00456
12	4	0.00175
17	4	0.00148
53	4	0.00243
54	3	0.00156
91	3	0.00172
103	3	0.00223
162	3	0.00189
9	2	0.00112
11	2	0.000858
18	2	0.000852
546	2	0.00181
21	1	0.000638
32	1	0.000595
40	1	0.000602
59	1	0.000442
68	1	0.000532
75	1	0.000589
106	1	0.000669
114	1	0.000696
139	1	0.00074
163	1	0.000864
182	1	0.000792
197	1	0.000892
248	1	0.000862
728	1	0.000908
856	1	0.000909
4470	1	0.000916
5400	1	0.000914
16300	1	0.000916
43200	1	0.000916
56700	1	0.000916

CL78 ----> CL5

No. of shared pairs: :943

CL78 ----> CL69

No. of shared pairs: :740

CL78 ----> CL157

No. of shared pairs: :193

CL78 ----> CL51

No. of shared pairs: :88

CL78 ----> CL107

No. of shared pairs: :18

CL78 ----> CL8

No. of shared pairs: :10