Cluster no. 76

Cluster no. 76

Go back to cluster table

Cluster is part of supercluster: 4

Cluster characteristics:

size	4011
size_real	4011
ecount	198520
supercluster	4
annotations_summary	0.05% organelle/plastid 0.02% organelle/mitochondria 0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase
pair_completeness	0.574793875147232
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00149588631264024
satellite_probability	1.13992396794032e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3
S5	1300
S4	1360
S7	2
S9	0
S6	1330
S2	5
S1	2
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	24.0	27.5	0.0	0	23.0	0.5	0.0	0.0
S5	24.0	20700.0	22300.0	10.5	0	20900.0	56.0	63.5	13.5
S4	27.5	22300.0	23500.0	13.5	0	22700.0	62.5	73.0	18.5
S7	0.0	10.5	13.5	0.0	0	10.5	0.0	0.0	0.0
S9	0.0	0.0	0.0	0.0	0	0.0	0.0	0.0	0.0
S6	23.0	20900.0	22700.0	10.5	0	21400.0	70.0	73.0	19.0
S2	0.5	56.0	62.5	0.0	0	70.0	0.0	0.0	0.5
S1	0.0	63.5	73.0	0.0	0	73.0	0.0	0.0	0.0
S3	0.0	13.5	18.5	0.0	0	19.0	0.5	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.991	1.060	0.000	NA	0.934	6.980	0.000	0.000
S5	0.991	1.000	1.010	0.943	NA	0.994	0.915	0.939	0.812
S4	1.060	1.010	0.989	1.130	NA	1.000	0.953	1.010	1.040
S7	0.000	0.943	1.130	0.000	NA	0.927	0.000	0.000	0.000
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	0.934	0.994	1.000	0.927	NA	1.000	1.130	1.060	1.120
S2	6.980	0.915	0.953	0.000	NA	1.130	0.000	0.000	10.200
S1	0.000	0.939	1.010	0.000	NA	1.060	0.000	0.000	0.000
S3	0.000	0.812	1.040	0.000	NA	1.120	10.200	0.000	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.00025

plastid plastid 2 0.00050

hAT hAT-TPase hAT hAT-TPase 1 0.00025

clusters with similarity:

Cluster	Number of similarity hits

118	1060
115	846
35	266
220	26
95	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

115	467	0.377
118	393	0.397
220	47	0.0724
35	28	0.0184
29	3	0.0019
67	3	0.00215
1040	2	0.00364
1	1	0.000442
6	1	0.000314
15	1	0.000355
24	1	0.000862
26	1	0.000681
34	1	0.000582
37	1	0.000779
41	1	0.000885
45	1	0.000507
48	1	0.00066
49	1	0.00048
80	1	0.00078
84	1	0.000777
90	1	0.000825
92	1	0.00101
95	1	0.000919
146	1	0.000941
151	1	0.00103
164	1	0.00171
179	1	0.00124
194	1	0.00156
231	1	0.00154
296	1	0.00175
6410	1	0.00184
15200	1	0.00184
47400	1	0.00184

CL76 ----> CL115

No. of shared pairs: :467

CL76 ----> CL118

No. of shared pairs: :393

CL76 ----> CL220

No. of shared pairs: :47

CL76 ----> CL35

No. of shared pairs: :28