Cluster no. 73

Cluster no. 73

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Cluster is part of supercluster: 12

Cluster characteristics:

size	4161
size_real	4161
ecount	154958
supercluster	12
annotations_summary	0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
pair_completeness	0.555514018691589
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0278779139629897
satellite_probability	1.53331074163333e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1
S5	1360
S4	1380
S7	6
S9	2
S6	1410
S2	5
S1	0
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	0.5	0.5	0.0	0.0	2.0	0.0	0	0.0
S5	0.5	16800.0	17500.0	56.5	5.5	16400.0	52.5	0	15.5
S4	0.5	17500.0	18400.0	52.0	3.0	17400.0	53.0	0	19.0
S7	0.0	56.5	52.0	0.0	0.0	55.5	0.5	0	0.0
S9	0.0	5.5	3.0	0.0	0.0	5.5	0.0	0	0.0
S6	2.0	16400.0	17400.0	55.5	5.5	16300.0	47.5	0	18.5
S2	0.0	52.5	53.0	0.5	0.0	47.5	0.0	0	0.0
S1	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0	0.0
S3	0.0	15.5	19.0	0.0	0.0	18.5	0.0	0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.508	0.483	0.000	0.000	2.050	0.000	NA	0.000
S5	0.508	1.010	0.997	1.050	1.200	0.997	1.040	NA	0.892
S4	0.483	0.997	0.999	0.916	0.621	1.000	1.000	NA	1.040
S7	0.000	1.050	0.916	0.000	0.000	1.040	3.070	NA	0.000
S9	0.000	1.200	0.621	0.000	0.000	1.210	0.000	NA	0.000
S6	2.050	0.997	1.000	1.040	1.210	0.999	0.954	NA	1.080
S2	0.000	1.040	1.000	3.070	0.000	0.954	0.000	NA	0.000
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	0.000	0.892	1.040	0.000	0.000	1.080	0.000	NA	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ivana Ty1-INT Ivana Ty1-INT 1 0.00024

Reina Ty3-GAG Reina Ty3-GAG 3 0.00072

clusters with similarity:

Cluster	Number of similarity hits

41	1260
80	282
185	134
216	11
211	2
84	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

80	394	0.295
41	360	0.304
185	108	0.124
216	32	0.0446
37	7	0.00524
48	6	0.00383
3	5	0.00146
67	3	0.00207
7100	3	0.00503
14	2	0.000909
24	2	0.00165
29	2	0.00122
39	2	0.00129
84	2	0.00149
90	2	0.00158
95	2	0.00175
99	2	0.00179
233	2	0.00306
12400	2	0.00336
44600	2	0.00336
50100	2	0.00336
53200	2	0.00336
2	1	0.000467
6	1	0.000309
13	1	0.000472
26	1	0.000658
27	1	0.000682
28	1	0.000613
33	1	0.000425
34	1	0.000565
43	1	0.00054
45	1	0.000494
87	1	0.000822
117	1	0.00104
126	1	0.000996
130	1	0.001
211	1	0.00129
297	1	0.00153
360	1	0.00162
404	1	0.00162
634	1	0.00164
2880	1	0.00167
2940	1	0.00167
3970	1	0.00167
4330	1	0.00167
8320	1	0.00168
10800	1	0.00168
19500	1	0.00168
24400	1	0.00168
35100	1	0.00168
40800	1	0.00168
48100	1	0.00168
51700	1	0.00168
55400	1	0.00168

CL73 ----> CL80

No. of shared pairs: :394

CL73 ----> CL41

No. of shared pairs: :360

CL73 ----> CL185

No. of shared pairs: :108

CL73 ----> CL216

No. of shared pairs: :32