Cluster no. 69

Cluster no. 69

Go back to cluster table

Cluster is part of supercluster: 2

Cluster characteristics:

size	4326
size_real	4326
ecount	766857
supercluster	2
annotations_summary
pair_completeness	0.316494217894096
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.37286176606565
satellite_probability	4.15721758402327e-08
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1480
S5	7
S4	3
S7	1430
S9	1400
S6	5
S2	2
S1	2
S3	4

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	90600.0	211.0	60.0	85200.0	87300.0	98.0	98.5	53.5	34.0
S5	211.0	0.0	1.0	206.0	200.0	1.5	0.5	0.0	0.0
S4	60.0	1.0	0.0	78.0	59.0	0.5	0.0	0.0	0.0
S7	85200.0	206.0	78.0	79800.0	82000.0	89.0	97.5	44.5	24.0
S9	87300.0	200.0	59.0	82000.0	84100.0	93.0	91.0	52.0	27.5
S6	98.0	1.5	0.5	89.0	93.0	0.0	0.0	1.0	0.5
S2	98.5	0.5	0.0	97.5	91.0	0.0	0.0	0.0	0.0
S1	53.5	0.0	0.0	44.5	52.0	1.0	0.0	0.0	0.0
S3	34.0	0.0	0.0	24.0	27.5	0.5	0.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.999	0.990	0.879	1.000	1.000	1.010	0.996	1.030	1.150
S5	0.990	0.000	6.230	1.030	0.974	6.540	2.150	0.000	0.000
S4	0.879	6.230	0.000	1.220	0.898	6.810	0.000	0.000	0.000
S7	1.000	1.030	1.220	0.999	1.000	0.972	1.050	0.913	0.864
S9	1.000	0.974	0.898	1.000	1.000	0.991	0.956	1.040	0.966
S6	1.010	6.540	6.810	0.972	0.991	0.000	0.000	17.900	15.700
S2	0.996	2.150	0.000	1.050	0.956	0.000	0.000	0.000	0.000
S1	1.030	0.000	0.000	0.913	1.040	17.900	0.000	0.000	0.000
S3	1.150	0.000	0.000	0.864	0.966	15.700	0.000	0.000	0.000

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

51	28300
78	28300
5	2860
157	715
18	581
36	144
248	8

clusters connected through mates:

Cluster	Number of shared read pairs	k

51	952	0.408
78	740	0.334
157	247	0.161
5	72	0.0241
8	12	0.00408
59	10	0.00435
36	8	0.00388
248	8	0.00671
22	6	0.00218
11	5	0.00212
162	5	0.00308
4	4	0.00147
18	4	0.00168
12	3	0.0013
17	3	0.0011
68	2	0.00105
83	2	0.00134
987	2	0.00177
23400	2	0.00178
42600	2	0.00178
70200	2	0.00178
9	1	0.000549
53	1	0.000595
54	1	0.000511
91	1	0.000562
106	1	0.000655
107	1	0.000591
133	1	0.000836
139	1	0.000723
172	1	0.000844
198	1	0.000766
203	1	0.000778
265	1	0.000844
742	1	0.000882
1640	1	0.000886
1990	1	0.000887
2220	1	0.000886
6090	1	0.000888
6470	1	0.000889
33200	1	0.00089
37200	1	0.00089
37300	1	0.00089
38800	1	0.00089
39100	1	0.00089
42200	1	0.00089
43000	1	0.00089
50200	1	0.00089
59000	1	0.00089
60600	1	0.00089

CL69 ----> CL51

No. of shared pairs: :952

CL69 ----> CL78

No. of shared pairs: :740

CL69 ----> CL157

No. of shared pairs: :247

CL69 ----> CL5

No. of shared pairs: :72

CL69 ----> CL8

No. of shared pairs: :12

CL69 ----> CL59

No. of shared pairs: :10