Cluster no. 68

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Cluster is part of supercluster: 7

Cluster characteristics:

size 4663
size_real 4663
ecount 67330
supercluster 7
annotations_summary 0.13% organelle/plastid
pair_completeness 0.494072412688241
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0147973407677461
satellite_probability 7.87864394035015e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1560
S5 13
S4 3
S7 1540
S9 1510
S6 7
S2 20
S1 8
S3 4
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 7550.0 106 4.0 7180.0 7580.0 37.0 77.0 29.5 25.0
S5 106.0 3 0.0 115.0 112.0 0.0 1.0 0.0 0.0
S4 4.0 0 1.0 4.5 5.0 0.0 0.5 0.0 0.0
S7 7180.0 115 4.5 6790.0 7090.0 27.5 76.5 31.0 22.5
S9 7580.0 112 5.0 7090.0 7580.0 34.0 89.0 23.5 29.5
S6 37.0 0 0.0 27.5 34.0 0.0 0.0 0.0 0.5
S2 77.0 1 0.5 76.5 89.0 0.0 0.0 0.0 0.0
S1 29.5 0 0.0 31.0 23.5 0.0 0.0 0.0 0.0
S3 25.0 0 0.0 22.5 29.5 0.5 0.0 0.0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.997 0.937 0.795 1.000 1.000 1.110 0.941 1.050 0.961
S5 0.937 1.780 0.000 1.080 0.992 0.000 0.819 0.000 0.000
S4 0.795 0.000 299.000 0.947 0.995 0.000 9.200 0.000 0.000
S7 1.000 1.080 0.947 1.000 0.992 0.877 0.989 1.160 0.916
S9 1.000 0.992 0.995 0.992 1.000 1.030 1.090 0.835 1.140
S6 1.110 0.000 0.000 0.877 1.030 0.000 0.000 0.000 4.390
S2 0.941 0.819 9.200 0.989 1.090 0.000 0.000 0.000 0.000
S1 1.050 0.000 0.000 1.160 0.835 0.000 0.000 0.000 0.000
S3 0.961 0.000 0.000 0.916 1.140 4.390 0.000 0.000 0.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 6 0.0013

clusters with similarity:

Cluster Number of similarity hits
22 254
36 164
11 54
206 5
198 4
54 3
251 2
64 1
173 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
36 357 0.206
11 108 0.0532
206 23 0.0237
198 19 0.0196
22 13 0.00538
251 11 0.0125
4 7 0.00293
1900 6 0.00754
1870 5 0.00629
12 4 0.00202
53 4 0.00297
54 4 0.00246
91 4 0.00277
3360 4 0.00505
4090 4 0.00505
4830 4 0.00505
9380 4 0.00505
9 3 0.00202
1730 3 0.00378
3270 3 0.00378
3310 3 0.00379
4890 3 0.00379
6460 3 0.00379
7780 3 0.00379
13600 3 0.00379
15400 3 0.00379
15700 3 0.00379
17000 3 0.00379
19100 3 0.00379
5 2 0.000755
69 2 0.00105
2520 2 0.00252
7660 2 0.00253
8290 2 0.00253
8300 2 0.00253
9180 2 0.00253
9220 2 0.00253
10100 2 0.00253
12200 2 0.00253
15600 2 0.00253
23800 2 0.00253
24100 2 0.00253
29500 2 0.00253
31400 2 0.00253
35600 2 0.00253
36100 2 0.00253
36300 2 0.00253
42000 2 0.00253
45600 2 0.00253
54300 2 0.00253
56600 2 0.00253
56800 2 0.00253
57000 2 0.00253
57700 2 0.00253
1 1 0.000399
2 1 0.000428
8 1 0.000384
17 1 0.000416
18 1 0.000489
51 1 0.000501
75 1 0.000716
78 1 0.000532
83 1 0.000859
102 1 0.000865
133 1 0.00116
157 1 0.000833
158 1 0.00118
162 1 0.000775
192 1 0.00104
265 1 0.00118
379 1 0.00122
987 1 0.00125
1180 1 0.00125
1410 1 0.00126
1470 1 0.00125
1580 1 0.00126
2850 1 0.00126
3060 1 0.00126
4400 1 0.00126
5660 1 0.00126
7120 1 0.00126
7870 1 0.00126
7980 1 0.00127
8200 1 0.00126
8520 1 0.00126
8830 1 0.00127
10400 1 0.00126
11000 1 0.00127
11100 1 0.00126
13300 1 0.00126
13500 1 0.00126
13600 1 0.00126
14000 1 0.00126
14200 1 0.00127
16000 1 0.00126
16100 1 0.00126
16700 1 0.00126
17400 1 0.00126
17500 1 0.00126
18100 1 0.00126
18600 1 0.00126
18900 1 0.00126
18900 1 0.00126
21300 1 0.00127
22300 1 0.00127
22900 1 0.00127
25100 1 0.00127
26000 1 0.00127
27200 1 0.00127
27300 1 0.00127
28400 1 0.00127
30900 1 0.00127
33600 1 0.00127
36400 1 0.00127
37000 1 0.00127
37400 1 0.00127
39700 1 0.00127
40000 1 0.00127
40900 1 0.00127
42300 1 0.00127
44200 1 0.00127
45100 1 0.00127
46200 1 0.00127
49300 1 0.00127
49600 1 0.00127
50500 1 0.00127
50900 1 0.00127
51200 1 0.00127
51300 1 0.00127
55900 1 0.00127
56100 1 0.00127
56700 1 0.00127
56900 1 0.00127
58700 1 0.00127
59000 1 0.00127
59500 1 0.00127
61900 1 0.00127
62500 1 0.00127
65200 1 0.00127
65500 1 0.00127
67300 1 0.00127
69500 1 0.00127
69900 1 0.00127
70600 1 0.00127

CL68 ----> CL36

image

No. of shared pairs: :357

CL68 ----> CL11

image

No. of shared pairs: :108

CL68 ----> CL206

image

No. of shared pairs: :23

CL68 ----> CL198

image

No. of shared pairs: :19

CL68 ----> CL22

image

No. of shared pairs: :13

CL68 ----> CL251

image

No. of shared pairs: :11