Cluster no. 66

Cluster no. 66

Go back to cluster table

Cluster is part of supercluster: 11

Cluster characteristics:

size	4743
size_real	4743
ecount	227302
supercluster	11
annotations_summary	0.04% organelle/plastid
pair_completeness	0.499525766677205
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00210837022981235
satellite_probability	2.60623974767306e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	4
S5	1500
S4	1640
S7	4
S9	2
S6	1590
S2	7
S1	6
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	62.0	77.0	0.0	0.5	64.5	0.0	0.0	0.5
S5	62.0	21800.0	24900.0	40.5	36.0	23400.0	146.0	101.0	26.5
S4	77.0	24900.0	28100.0	39.5	40.5	26700.0	166.0	114.0	27.0
S7	0.0	40.5	39.5	0.0	0.0	41.0	1.0	0.0	0.0
S9	0.5	36.0	40.5	0.0	0.0	35.0	0.0	0.0	0.0
S6	64.5	23400.0	26700.0	41.0	35.0	25000.0	146.0	102.0	30.5
S2	0.0	146.0	166.0	1.0	0.0	146.0	2.0	1.5	0.0
S1	0.0	101.0	114.0	0.0	0.0	102.0	1.5	0.0	0.0
S3	0.5	26.5	27.0	0.0	0.0	30.5	0.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.979	1.070	0.000	4.960	0.949	0.000	0.000	6.580
S5	0.979	0.997	1.000	1.070	1.040	1.000	1.020	1.020	1.010
S4	1.070	1.000	0.996	0.919	1.030	1.000	1.020	1.010	0.907
S7	0.000	1.070	0.919	0.000	0.000	1.010	4.020	0.000	0.000
S9	4.960	1.040	1.030	0.000	0.000	0.941	0.000	0.000	0.000
S6	0.949	1.000	1.000	1.010	0.941	0.998	0.953	0.967	1.090
S2	0.000	1.020	1.020	4.020	0.000	0.953	2.120	2.310	0.000
S1	0.000	1.020	1.010	0.000	0.000	0.967	2.310	0.000	0.000
S3	6.580	1.010	0.907	0.000	0.000	1.090	0.000	0.000	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 2 0.00042

clusters with similarity:

Cluster	Number of similarity hits

25	2280
39	1600
19	368
55	68
237	20
184	15
10	4
33	3
20	2
14	1
67	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

39	494	0.282
25	470	0.304
19	142	0.0568
55	88	0.0583
184	29	0.0273
237	11	0.0127
6	7	0.00204
15	7	0.00228
33	7	0.00275
3	6	0.00166
29	4	0.00219
14	3	0.00125
67	3	0.00182
2	2	0.000855
10	2	0.000843
28	2	0.00109
34	2	0.00102
48	2	0.00113
61	2	0.00123
95	2	0.00149
145	2	0.00217
2970	2	0.00252
6450	2	0.00252
8490	2	0.00252
19200	2	0.00252
1	1	0.000398
20	1	0.000587
35	1	0.000565
37	1	0.000652
56	1	0.000708
86	1	0.000774
92	1	0.000804
97	1	0.00103
99	1	0.000761
105	1	0.00076
122	1	0.00101
132	1	0.0011
165	1	0.00109
178	1	0.00102
194	1	0.00112
278	1	0.00119
323	1	0.00118
326	1	0.00121
350	1	0.00124
435	1	0.00124
850	1	0.00125
1130	1	0.00125
2880	1	0.00126
12300	1	0.00126
14500	1	0.00126
22300	1	0.00126
23800	1	0.00126
24900	1	0.00126
25000	1	0.00126
26000	1	0.00126
30700	1	0.00126
37700	1	0.00126
41300	1	0.00126
43100	1	0.00126
47100	1	0.00126
53300	1	0.00126
65900	1	0.00126

CL66 ----> CL39

No. of shared pairs: :494

CL66 ----> CL25

No. of shared pairs: :470

CL66 ----> CL19

No. of shared pairs: :142

CL66 ----> CL55

No. of shared pairs: :88

CL66 ----> CL184

No. of shared pairs: :29

CL66 ----> CL237

No. of shared pairs: :11