Cluster no. 65

Cluster no. 65

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Cluster is part of supercluster: 2

Cluster characteristics:

size	4747
size_real	4747
ecount	309176
supercluster	2
annotations_summary	0.06% organelle/plastid
pair_completeness	0.708783297336213
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.259111017484727
satellite_probability	2.96125941078068e-11
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1640
S5	10
S4	2
S7	1580
S9	1490
S6	6
S2	12
S1	8
S3	3

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	37900.0	266.0	71.5	35900	33300.0	69.0	238.0	204.0	38.0
S5	266.0	2.0	0.0	236	236.0	1.0	1.5	1.0	0.5
S4	71.5	0.0	0.0	70	63.0	0.0	0.0	1.0	0.0
S7	35900.0	236.0	70.0	34400	31800.0	58.0	244.0	218.0	29.0
S9	33300.0	236.0	63.0	31800	29600.0	68.5	205.0	196.0	27.5
S6	69.0	1.0	0.0	58	68.5	2.0	0.0	0.0	0.0
S2	238.0	1.5	0.0	244	205.0	0.0	1.0	1.5	0.5
S1	204.0	1.0	1.0	218	196.0	0.0	1.5	1.0	0.0
S3	38.0	0.5	0.0	29	27.5	0.0	0.5	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.000	1.020	0.996	0.999	0.998	0.995	0.986	0.939	1.140
S5	1.020	1.120	0.000	0.952	1.030	2.090	0.900	0.667	2.180
S4	0.996	0.000	0.000	1.020	0.992	0.000	0.000	2.410	0.000
S7	0.999	0.952	1.020	1.000	1.000	0.877	1.060	1.050	0.912
S9	0.998	1.030	0.992	1.000	1.000	1.120	0.957	1.020	0.931
S6	0.995	2.090	0.000	0.877	1.120	15.700	0.000	0.000	0.000
S2	0.986	0.900	0.000	1.060	0.957	0.000	0.645	1.070	2.340
S1	0.939	0.667	2.410	1.050	1.020	0.000	1.070	0.797	0.000
S3	1.140	2.180	0.000	0.912	0.931	0.000	2.340	0.000	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 3 0.00063

clusters with similarity:

Cluster	Number of similarity hits

22	1570
107	918
139	192
136	69
18	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

107	222	0.228
136	52	0.0496
139	50	0.0751
22	42	0.0207
17	21	0.0104
8	7	0.00315
91	7	0.0066
18	6	0.00361
4	5	0.0025
54	5	0.00403
2610	4	0.00977
11	3	0.00182
162	3	0.00331
2750	3	0.00733
11100	3	0.00738
9	2	0.00181
51	2	0.00124
53	2	0.00208
106	2	0.00247
2080	2	0.00491
3780	2	0.00493
5070	2	0.00492
7840	2	0.00492
18500	2	0.00493
19300	2	0.00493
27200	2	0.00493
51100	2	0.00493
54700	2	0.00493
61900	2	0.00493
12	1	0.000627
40	1	0.00102
44	1	0.000794
75	1	0.000989
83	1	0.00128
133	1	0.00209
140	1	0.00118
192	1	0.00172
209	1	0.00189
246	1	0.00201
253	1	0.00215
379	1	0.00232
492	1	0.00239
840	1	0.00243
2220	1	0.00245
5180	1	0.00245
6690	1	0.00246
7440	1	0.00247
10400	1	0.00246
11900	1	0.00246
12100	1	0.00247
14800	1	0.00246
15000	1	0.00246
17800	1	0.00246
18500	1	0.00246
25500	1	0.00247
26900	1	0.00247
27300	1	0.00247
28000	1	0.00247
29400	1	0.00247
32700	1	0.00247
34800	1	0.00247
35500	1	0.00247
38300	1	0.00247
39400	1	0.00247
40300	1	0.00247
50200	1	0.00247
56200	1	0.00247
57200	1	0.00247
57800	1	0.00247
63100	1	0.00247
65600	1	0.00247
69400	1	0.00247

CL65 ----> CL107

No. of shared pairs: :222

CL65 ----> CL136

No. of shared pairs: :52

CL65 ----> CL139

No. of shared pairs: :50

CL65 ----> CL22

No. of shared pairs: :42

CL65 ----> CL17

No. of shared pairs: :21