Cluster no. 64

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Cluster is part of supercluster: 5

Cluster characteristics:

size 4780
size_real 4780
ecount 215109
supercluster 5
annotations_summary 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
pair_completeness 0.486780715396579
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0428870292887029
satellite_probability 6.32661873636451e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 4
S5 3
S4 8
S7 6
S9 2
S6 17
S2 1520
S1 1600
S3 1620
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 0.0 0.0 0.0 0.0 0.0 6.0 5.5 8.0
S5 0.0 0.0 0.5 0.0 0.0 0.5 29.5 25.0 37.0
S4 0.0 0.5 1.0 0.5 0.0 2.0 184.0 216.0 225.0
S7 0.0 0.0 0.5 1.0 0.0 0.0 20.0 23.5 26.0
S9 0.0 0.0 0.0 0.0 0.0 0.0 17.0 19.5 25.5
S6 0.0 0.5 2.0 0.0 0.0 3.0 132.0 149.0 135.0
S2 6.0 29.5 184.0 20.0 17.0 132.0 20200.0 22300.0 23200.0
S1 5.5 25.0 216.0 23.5 19.5 149.0 22300.0 24400.0 25300.0
S3 8.0 37.0 225.0 26.0 25.5 135.0 23200.0 25300.0 26400.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.000 0.000 0.000 0.000 0.000 1.000 0.838 1.170
S5 0.000 0.000 1.850 0.000 0.000 2.760 1.040 0.803 1.140
S4 0.000 1.850 0.542 2.400 0.000 1.620 0.953 1.020 1.020
S7 0.000 0.000 2.400 42.700 0.000 0.000 0.917 0.983 1.050
S9 0.000 0.000 0.000 0.000 0.000 0.000 0.892 0.934 1.170
S6 0.000 2.760 1.620 0.000 0.000 3.640 1.020 1.050 0.916
S2 1.000 1.040 0.953 0.917 0.892 1.020 0.997 1.000 1.000
S1 0.838 0.803 1.020 0.983 0.934 1.050 1.000 1.000 0.998
S3 1.170 1.140 1.020 1.050 1.170 0.916 1.000 0.998 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-RT Athila Ty3-RT 1 0.00021

clusters with similarity:

Cluster Number of similarity hits
58 1740
7 68
38 44
173 25
390 7
68 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
58 383 0.274
38 126 0.068
7 19 0.0084
390 15 0.0179
260 8 0.00882
23 4 0.00204
5060 4 0.00483
57 3 0.00185
85 3 0.00225
108 3 0.00243
3950 3 0.00362
14500 3 0.00363
16000 3 0.00363
19500 3 0.00363
27 2 0.00118
42 2 0.00142
148 2 0.00167
153 2 0.00163
168 2 0.00177
2190 2 0.00241
2760 2 0.00241
4750 2 0.00242
5330 2 0.00242
5920 2 0.00242
6660 2 0.00242
8970 2 0.00242
9030 2 0.00242
9150 2 0.00242
9410 2 0.00242
10900 2 0.00242
12700 2 0.00242
13800 2 0.00242
14500 2 0.00242
14700 2 0.00242
15100 2 0.00242
16000 2 0.00242
24900 2 0.00242
30600 2 0.00242
40300 2 0.00242
49000 2 0.00242
49800 2 0.00242
50100 2 0.00242
63800 2 0.00242
30 1 0.000545
31 1 0.000635
46 1 0.000576
77 1 0.00094
96 1 0.000729
110 1 0.000685
125 1 0.000763
129 1 0.000945
134 1 0.00113
174 1 0.000977
175 1 0.000979
194 1 0.00108
200 1 0.00106
1160 1 0.0012
1340 1 0.0012
1340 1 0.0012
1800 1 0.0012
2160 1 0.00121
3400 1 0.00121
4130 1 0.00121
4500 1 0.00121
4940 1 0.00121
5000 1 0.00121
5150 1 0.00121
5200 1 0.00121
5750 1 0.00121
6540 1 0.00121
6800 1 0.00121
7420 1 0.00121
7600 1 0.00121
7610 1 0.00121
7650 1 0.00121
7900 1 0.00121
8480 1 0.00121
8550 1 0.00121
8550 1 0.00121
8930 1 0.00121
9500 1 0.00121
10000 1 0.00121
10200 1 0.00121
11100 1 0.00121
11400 1 0.00121
11400 1 0.00121
11600 1 0.00121
12400 1 0.00121
12400 1 0.00121
12500 1 0.00121
12700 1 0.00121
12900 1 0.00121
13000 1 0.00121
14200 1 0.00121
15000 1 0.00121
16400 1 0.00121
16500 1 0.00121
16900 1 0.00121
17500 1 0.00121
18400 1 0.00121
19200 1 0.00121
19400 1 0.00121
19600 1 0.00121
20400 1 0.00121
21700 1 0.00121
23100 1 0.00121
23700 1 0.00121
23800 1 0.00121
23900 1 0.00121
24100 1 0.00121
24500 1 0.00121
25400 1 0.00121
25700 1 0.00121
26100 1 0.00121
28100 1 0.00121
28100 1 0.00121
28900 1 0.00121
29300 1 0.00121
29400 1 0.00121
29800 1 0.00121
32000 1 0.00121
32100 1 0.00121
33200 1 0.00121
35000 1 0.00121
35900 1 0.00121
36400 1 0.00121
36800 1 0.00121
37000 1 0.00121
37500 1 0.00121
37600 1 0.00121
38900 1 0.00121
39300 1 0.00121
40500 1 0.00121
40600 1 0.00121
41300 1 0.00121
42300 1 0.00121
42800 1 0.00121
43800 1 0.00121
43900 1 0.00121
44700 1 0.00121
44700 1 0.00121
44700 1 0.00121
47300 1 0.00121
50600 1 0.00121
51000 1 0.00121
51400 1 0.00121
51600 1 0.00121
52700 1 0.00121
53000 1 0.00121
53200 1 0.00121
54300 1 0.00121
56200 1 0.00121
56700 1 0.00121
57000 1 0.00121
57700 1 0.00121
59400 1 0.00121
59900 1 0.00121
60300 1 0.00121
61700 1 0.00121
61900 1 0.00121
62100 1 0.00121
62200 1 0.00121
62500 1 0.00121
70300 1 0.00121
70400 1 0.00121

CL64 ----> CL58

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No. of shared pairs: :383

CL64 ----> CL38

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No. of shared pairs: :126

CL64 ----> CL7

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No. of shared pairs: :19

CL64 ----> CL390

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No. of shared pairs: :15