Cluster no. 61

Go back to cluster table

Cluster is part of supercluster: 6

Cluster characteristics:

size 5001
size_real 5001
ecount 91452
supercluster 6
annotations_summary 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.02% Class_I/LINE:LINE-RT
0.02% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.498202516476932
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000999800039992002
satellite_probability 2.60623974767306e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 1660
S4 1590
S7 2
S9 5
S6 1730
S2 4
S1 3
S3 3
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 14.5 11.0 0.0 0.0 13.0 0.0 0.0 0.0
S5 14.5 10700.0 10300.0 15.5 48.0 9970.0 23.0 48.5 8.0
S4 11.0 10300.0 10200.0 11.5 30.5 9800.0 19.5 38.0 5.5
S7 0.0 15.5 11.5 0.0 0.0 9.5 0.0 0.5 0.0
S9 0.0 48.0 30.5 0.0 1.0 32.0 0.0 0.0 0.0
S6 13.0 9970.0 9800.0 9.5 32.0 9440.0 21.5 45.5 11.5
S2 0.0 23.0 19.5 0.0 0.0 21.5 0.0 0.0 0.0
S1 0.0 48.5 38.0 0.5 0.0 45.5 0.0 0.0 0.0
S3 0.0 8.0 5.5 0.0 0.0 11.5 0.0 0.0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 1.100 0.857 0.000 0.000 1.050 0.000 0.00 0.000
S5 1.100 1.010 0.993 1.230 1.260 0.996 1.050 1.07 0.938
S4 0.857 0.993 1.010 0.932 0.821 1.000 0.914 0.86 0.660
S7 0.000 1.230 0.932 0.000 0.000 0.800 0.000 9.33 0.000
S9 0.000 1.260 0.821 0.000 7.360 0.894 0.000 0.00 0.000
S6 1.050 0.996 1.000 0.800 0.894 1.000 1.050 1.07 1.430
S2 0.000 1.050 0.914 0.000 0.000 1.050 0.000 0.00 0.000
S1 0.000 1.070 0.860 9.330 0.000 1.070 0.000 0.00 0.000
S3 0.000 0.938 0.660 0.000 0.000 1.430 0.000 0.00 0.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 2e-04
LINE LINE-RT LINE LINE-RT 1 2e-04
SIRE Ty1-RH SIRE Ty1-RH 1 2e-04
SIRE Ty1-RT SIRE Ty1-RT 1 2e-04
Tekay Ty3-INT Tekay Ty3-INT 2 4e-04

clusters with similarity:

Cluster Number of similarity hits
97 167
181 46
81 44
94 5
55 1
99 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
181 270 0.223
81 160 0.133
97 135 0.133
94 71 0.0604
3 11 0.00301
6 5 0.00144
84 5 0.00316
1030 5 0.00591
31 4 0.00252
55 4 0.00257
56 4 0.00274
89 4 0.00305
117 4 0.00332
120 4 0.00323
128 4 0.00274
1300 4 0.00473
1540 4 0.00476
2170 4 0.00475
4100 4 0.00476
6980 4 0.00476
9660 4 0.00476
14 3 0.00123
16 3 0.00222
19 3 0.00118
34 3 0.00149
39 3 0.00167
80 3 0.0019
88 3 0.00201
95 3 0.00217
99 3 0.00221
123 3 0.00213
146 3 0.00221
252 3 0.00327
1600 3 0.00355
2420 3 0.00356
4070 3 0.00357
4440 3 0.00357
5170 3 0.00357
6240 3 0.00357
6500 3 0.00358
10200 3 0.00357
16200 3 0.00358
10 2 0.000827
26 2 0.00113
28 2 0.00107
29 2 0.00107
33 2 0.00077
43 2 0.000955
52 2 0.00144
60 2 0.0011
66 2 0.00123
74 2 0.00172
86 2 0.00149
92 2 0.00155
111 2 0.00196
112 2 0.00171
122 2 0.00194
145 2 0.00207
293 2 0.00232
2550 2 0.00238
4750 2 0.00238
6460 2 0.00238
8380 2 0.00238
10400 2 0.00238
13300 2 0.00238
16400 2 0.00238
17000 2 0.00238
20700 2 0.00239
27300 2 0.00239
27600 2 0.00239
45500 2 0.00239
51900 2 0.00239
52900 2 0.00239
53300 2 0.00239
53500 2 0.00239
54300 2 0.00239
64500 2 0.00239
66000 2 0.00239
66700 2 0.00239
70800 2 0.00239
1 1 0.000391
2 1 0.000419
13 1 0.000424
15 1 0.000322
20 1 0.000572
35 1 0.000551
37 1 0.000633
41 1 0.000701
45 1 0.000441
49 1 0.000421
70 1 0.000862
71 1 0.000566
105 1 0.000734
115 1 0.000651
126 1 0.000802
135 1 0.000944
138 1 0.000961
141 1 0.000986
144 1 0.000965
151 1 0.00079
159 1 0.000881
169 1 0.000994
179 1 0.000905
186 1 0.00106
195 1 0.00105
204 1 0.00117
208 1 0.000978
211 1 0.000983
233 1 0.00111
250 1 0.00117
428 1 0.00118
615 1 0.00117
646 1 0.00118
722 1 0.00118
740 1 0.00118
891 1 0.00119
922 1 0.00118
951 1 0.00119
1230 1 0.00119
1470 1 0.00119
1520 1 0.00119
1580 1 0.00119
3060 1 0.00119
3230 1 0.00119
3540 1 0.00119
4480 1 0.00119
4830 1 0.00119
4870 1 0.00119
5200 1 0.00119
5370 1 0.00119
5380 1 0.00119
5450 1 0.00119
5630 1 0.00119
5710 1 0.00119
5820 1 0.00119
5860 1 0.00119
6080 1 0.00119
6210 1 0.00119
6570 1 0.00119
6740 1 0.00119
6800 1 0.00119
7260 1 0.00119
7290 1 0.00119
7430 1 0.00119
7960 1 0.00119
9560 1 0.00119
9610 1 0.00119
10700 1 0.00119
10700 1 0.00119
11700 1 0.00119
12700 1 0.00119
12800 1 0.00119
13900 1 0.00119
15000 1 0.00119
15300 1 0.00119
15800 1 0.00119
18000 1 0.00119
18700 1 0.00119
19000 1 0.00119
19200 1 0.00119
19200 1 0.00119
21000 1 0.00119
23000 1 0.00119
23800 1 0.00119
24100 1 0.00119
24400 1 0.00119
25100 1 0.00119
25400 1 0.00119
25600 1 0.00119
26200 1 0.00119
26300 1 0.00119
26800 1 0.00119
27800 1 0.00119
28800 1 0.00119
30400 1 0.00119
31400 1 0.00119
31900 1 0.00119
33300 1 0.00119
33600 1 0.00119
39500 1 0.00119
40100 1 0.00119
40500 1 0.00119
41300 1 0.00119
41800 1 0.00119
43100 1 0.00119
43200 1 0.00119
44100 1 0.00119
44700 1 0.00119
44700 1 0.00119
45000 1 0.00119
47100 1 0.00119
47500 1 0.00119
48600 1 0.00119
48700 1 0.00119
50500 1 0.00119
54000 1 0.00119
57200 1 0.00119
57700 1 0.00119
58800 1 0.00119
59200 1 0.00119
59600 1 0.00119
60900 1 0.00119
63800 1 0.00119
63900 1 0.00119
64200 1 0.00119
64400 1 0.00119
65300 1 0.00119
67400 1 0.00119
67700 1 0.00119
70000 1 0.00119

CL61 ----> CL181

image

No. of shared pairs: :270

CL61 ----> CL81

image

No. of shared pairs: :160

CL61 ----> CL97

image

No. of shared pairs: :135

CL61 ----> CL94

image

No. of shared pairs: :71

CL61 ----> CL3

image

No. of shared pairs: :11