Cluster no. 59

Cluster no. 59

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Cluster is part of supercluster: 2

Cluster characteristics:

size	5036
size_real	5036
ecount	422014
supercluster	2
annotations_summary	0.32% organelle/mitochondria 0.10% organelle/plastid 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-PROT
pair_completeness	0.364030335861322
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.249801429706116
satellite_probability	7.26824141345185e-11
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1730
S5	14
S4	7
S7	1630
S9	1630
S6	7
S2	8
S1	3
S3	4

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	49900	524.0	110.0	45800.0	48000	112.0	198.0	108.0	332.0
S5	524	4.0	1.0	485.0	483	1.0	2.0	0.5	2.5
S4	110	1.0	1.0	95.5	94	1.0	1.5	1.5	1.0
S7	45800	485.0	95.5	41900.0	44200	93.5	192.0	99.5	312.0
S9	48000	483.0	94.0	44200.0	46200	108.0	190.0	106.0	320.0
S6	112	1.0	1.0	93.5	108	1.0	0.0	0.5	0.0
S2	198	2.0	1.5	192.0	190	0.0	4.0	1.0	1.5
S1	108	0.5	1.5	99.5	106	0.5	1.0	1.0	1.0
S3	332	2.5	1.0	312.0	320	0.0	1.5	1.0	2.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.000	1.010	1.040	1.000	0.999	1.030	0.976	0.989	0.994
S5	1.010	0.748	0.918	1.020	0.971	0.887	0.952	0.440	0.722
S4	1.040	0.918	4.510	0.989	0.928	4.360	3.510	6.480	1.420
S7	1.000	1.020	0.989	0.997	1.000	0.936	1.030	0.988	1.010
S9	0.999	0.971	0.928	1.000	0.998	1.030	0.973	0.999	0.996
S6	1.030	0.887	4.360	0.936	1.030	4.210	0.000	2.090	0.000
S2	0.976	0.952	3.510	1.030	0.973	0.000	4.850	2.240	1.100
S1	0.989	0.440	6.480	0.988	0.999	2.090	2.240	4.150	1.360
S3	0.994	0.722	1.420	1.010	0.996	0.000	1.100	1.360	0.892

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 16 0.00318

plastid plastid 5 0.00099

Selgy Ty3-PROT Selgy Ty3-PROT 1 0.00020

clusters with similarity:

Cluster	Number of similarity hits

51	10900
18	6990

clusters connected through mates:

Cluster	Number of shared read pairs	k

51	1000	0.421
18	978	0.402
69	10	0.00435
8	8	0.00268
4	7	0.00253
22	7	0.0025
17	5	0.00179
136	5	0.00275
11	4	0.00166
36	4	0.00189
12	3	0.00127
53	3	0.00173
91	3	0.00164
157	3	0.00189
840	3	0.00254
12700	2	0.0017
5	1	0.00033
9	1	0.000534
19	1	0.000347
45	1	0.000384
54	1	0.000498
78	1	0.000442
83	1	0.000646
102	1	0.000649
107	1	0.000573
131	1	0.000661
139	1	0.000697
162	1	0.000597
167	1	0.000724
182	1	0.000743
198	1	0.000737
205	1	0.000808
219	1	0.000835
232	1	0.000771
248	1	0.000804
256	1	0.000802
277	1	0.000829
546	1	0.00084
1010	1	0.000845
1580	1	0.000848
1660	1	0.000847
6920	1	0.000851
7400	1	0.00085
10800	1	0.000851
12600	1	0.000851
13500	1	0.000851
15400	1	0.000851
17200	1	0.000851
17300	1	0.000851
18300	1	0.000851
19800	1	0.000851
19900	1	0.000851
29900	1	0.000851
34000	1	0.000851
49000	1	0.000851
52300	1	0.000851
53700	1	0.000851
54500	1	0.000851
57700	1	0.000851
60800	1	0.000851
66300	1	0.000851

CL59 ----> CL51

No. of shared pairs: :1004

CL59 ----> CL18

No. of shared pairs: :978

CL59 ----> CL69

No. of shared pairs: :10