Cluster no. 58

Cluster no. 58

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Cluster is part of supercluster: 5

Cluster characteristics:

size	5050
size_real	5050
ecount	305871
supercluster	5
annotations_summary
pair_completeness	0.629032258064516
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00554455445544554
satellite_probability	2.89983006268482e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	5
S5	20
S4	7
S7	2
S9	6
S6	9
S2	1540
S1	1760
S3	1700

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	2.0	0.5	0.0	0.0	0.5	0.5	64.5	72.5	76.5
S5	0.5	10.0	2.0	1.5	2.5	0.0	454.0	475.0	504.0
S4	0.0	2.0	0.0	0.0	0.5	0.0	114.0	117.0	116.0
S7	0.0	1.5	0.0	1.0	1.0	0.0	100.0	128.0	119.0
S9	0.5	2.5	0.5	1.0	1.0	0.5	93.5	95.0	102.0
S6	0.5	0.0	0.0	0.0	0.5	2.0	72.0	77.0	73.5
S2	64.5	454.0	114.0	100.0	93.5	72.0	29200.0	32400.0	32100.0
S1	72.5	475.0	117.0	128.0	95.0	77.0	32400.0	36000.0	35500.0
S3	76.5	504.0	116.0	119.0	102.0	73.5	32100.0	35500.0	34900.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	13.000	0.486	0.000	0.000	2.370	3.130	0.961	0.975	1.040
S5	0.486	1.450	1.210	0.904	1.780	0.000	1.010	0.955	1.030
S4	0.000	1.210	0.000	0.000	1.480	0.000	1.060	0.978	0.978
S7	0.000	0.904	0.000	2.500	2.940	0.000	0.924	1.060	1.000
S9	2.370	1.780	1.480	2.940	3.470	2.280	1.020	0.933	1.020
S6	3.130	0.000	0.000	0.000	2.280	12.000	1.030	0.996	0.963
S2	0.961	1.010	1.060	0.924	1.020	1.030	0.997	0.999	1.000
S1	0.975	0.955	0.978	1.060	0.933	0.996	0.999	1.000	1.000
S3	1.040	1.030	0.978	1.000	1.020	0.963	1.000	1.000	0.997

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

27	2420
64	1740
174	23
189	19
390	11
260	7
5	1
38	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

64	383	0.274
27	370	0.256
174	43	0.0556
260	19	0.0289
189	16	0.0227
390	12	0.0203
5	11	0.00452
1290	6	0.0103
42	3	0.00259
46	3	0.00202
85	3	0.00277
3060	3	0.00519
15500	3	0.0052
18500	3	0.0052
7	2	0.000994
23	2	0.00117
77	2	0.00246
125	2	0.00189
194	2	0.00297
5330	2	0.00346
10800	2	0.00347
11400	2	0.00347
14800	2	0.00347
15000	2	0.00347
19000	2	0.00347
21100	2	0.00347
29600	2	0.00347
31800	2	0.00347
36200	2	0.00347
49200	2	0.00347
51000	2	0.00347
58300	2	0.00347
10	1	0.000464
74	1	0.00111
100	1	0.000997
110	1	0.000827
113	1	0.00104
129	1	0.00124
152	1	0.00107
154	1	0.00142
171	1	0.00115
180	1	0.00166
202	1	0.00153
306	1	0.0016
333	1	0.00161
794	1	0.00171
1930	1	0.00173
3150	1	0.00173
5290	1	0.00173
6350	1	0.00173
6390	1	0.00173
7600	1	0.00173
7650	1	0.00173
7680	1	0.00173
9500	1	0.00173
9770	1	0.00173
13800	1	0.00173
16800	1	0.00174
18800	1	0.00174
21800	1	0.00174
23600	1	0.00174
31500	1	0.00174
35800	1	0.00174
54300	1	0.00174
55700	1	0.00174
64100	1	0.00174
65800	1	0.00174

CL58 ----> CL64

No. of shared pairs: :383

CL58 ----> CL27

No. of shared pairs: :370

CL58 ----> CL174

No. of shared pairs: :43

CL58 ----> CL260

No. of shared pairs: :19

CL58 ----> CL189

No. of shared pairs: :16

CL58 ----> CL390

No. of shared pairs: :12

CL58 ----> CL5

No. of shared pairs: :11