Cluster no. 57

Cluster no. 57

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Cluster is part of supercluster: 5

Cluster characteristics:

size	5106
size_real	5106
ecount	242299
supercluster	5
annotations_summary	0.08% organelle/plastid 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.02% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
pair_completeness	0.52326968973747
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00176263219741481
satellite_probability	2.0897667525813e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	6
S5	8
S4	8
S7	3
S9	5
S6	9
S2	1720
S1	1620
S3	1730

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	0.0	0.0	0.0	0.0	0	9.0	5.5	11.5
S5	0.0	0.0	0.0	0.0	0.5	2	202.0	180.0	200.0
S4	0.0	0.0	1.0	0.0	0.0	1	71.5	76.0	69.0
S7	0.0	0.0	0.0	1.0	0.0	0	70.5	73.0	65.5
S9	0.0	0.5	0.0	0.0	0.0	0	76.0	71.0	69.0
S6	0.0	2.0	1.0	0.0	0.0	5	120.0	148.0	130.0
S2	9.0	202.0	71.5	70.5	76.0	120	29200.0	26300.0	27900.0
S1	5.5	180.0	76.0	73.0	71.0	148	26300.0	24200.0	25300.0
S3	11.5	200.0	69.0	65.5	69.0	130	27900.0	25300.0	26600.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.000	0.000	0.000	0.000	0.000	0.999	0.671	1.340
S5	0.000	0.000	0.000	0.000	0.959	2.050	0.996	0.979	1.030
S4	0.000	0.000	5.080	0.000	0.000	2.730	0.944	1.100	0.953
S7	0.000	0.000	0.000	5.490	0.000	0.000	0.968	1.100	0.941
S9	0.000	0.959	0.000	0.000	0.000	0.000	1.010	1.040	0.962
S6	0.000	2.050	2.730	0.000	0.000	7.350	0.856	1.160	0.963
S2	0.999	0.996	0.944	0.968	1.010	0.856	1.000	0.995	1.000
S1	0.671	0.979	1.100	1.100	1.040	1.160	0.995	1.010	0.998
S3	1.340	1.030	0.953	0.941	0.962	0.963	1.000	0.998	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 4 0.00078

Alesia Ty1-RH Alesia Ty1-RH 1 0.00020

Tekay Ty3-GAG Tekay Ty3-GAG 3 0.00059

Tekay Ty3-INT Tekay Ty3-INT 1 0.00020

clusters with similarity:

Cluster	Number of similarity hits

38	1960
110	113
11	24
304	4
46	1
174	1
584	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

38	603	0.33
110	176	0.123
304	27	0.0316
46	22	0.0129
584	12	0.0148
7	9	0.00402
604	9	0.0111
23	7	0.00363
42	6	0.00435
85	6	0.0046
27	5	0.00299
108	5	0.00414
113	4	0.00339
143	4	0.00329
30	3	0.00166
64	3	0.00185
96	3	0.00223
1190	3	0.00372
7110	3	0.00374
15700	3	0.00375
15700	3	0.00375
100	2	0.00163
116	2	0.00175
124	2	0.00196
147	2	0.00162
152	2	0.00172
168	2	0.00181
1330	2	0.00248
2160	2	0.00249
4030	2	0.0025
4490	2	0.0025
7910	2	0.0025
11200	2	0.0025
14000	2	0.0025
18400	2	0.0025
28100	2	0.0025
46900	2	0.0025
47700	2	0.0025
59200	2	0.0025
66100	2	0.0025
21	1	0.000783
77	1	0.000964
125	1	0.000778
129	1	0.000969
137	1	0.00107
148	1	0.000854
153	1	0.000833
174	1	0.001
182	1	0.00103
249	1	0.0012
262	1	0.00119
275	1	0.00116
292	1	0.0012
311	1	0.00118
327	1	0.00119
450	1	0.00123
678	1	0.00124
970	1	0.00124
995	1	0.00124
1130	1	0.00125
1800	1	0.00124
2710	1	0.00125
3030	1	0.00125
3800	1	0.00125
3880	1	0.00125
3960	1	0.00125
4170	1	0.00125
4960	1	0.00125
5530	1	0.00125
5590	1	0.00125
6030	1	0.00125
6690	1	0.00125
7070	1	0.00125
7210	1	0.00125
8400	1	0.00125
8500	1	0.00125
9950	1	0.00125
11200	1	0.00125
11300	1	0.00125
12900	1	0.00125
13300	1	0.00125
14600	1	0.00125
15600	1	0.00125
16900	1	0.00125
19700	1	0.00125
21200	1	0.00125
21200	1	0.00125
21400	1	0.00125
23000	1	0.00125
24000	1	0.00125
26100	1	0.00125
28300	1	0.00125
29100	1	0.00125
30000	1	0.00125
31500	1	0.00125
40300	1	0.00125
42100	1	0.00125
43300	1	0.00125
46500	1	0.00125
49400	1	0.00125
49400	1	0.00125
50500	1	0.00125
51600	1	0.00125
54200	1	0.00125
56800	1	0.00125
59600	1	0.00125
59600	1	0.00125
59900	1	0.00125
61000	1	0.00125
61500	1	0.00125
62500	1	0.00125
68500	1	0.00125
70200	1	0.00125

CL57 ----> CL38

No. of shared pairs: :603

CL57 ----> CL110

No. of shared pairs: :176

CL57 ----> CL304

No. of shared pairs: :27

CL57 ----> CL46

No. of shared pairs: :22

CL57 ----> CL584

No. of shared pairs: :12