Cluster no. 55

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Cluster is part of supercluster: 25

Cluster characteristics:

size 5232
size_real 5232
ecount 61869
supercluster 25
annotations_summary 0.17% organelle/mitochondria
0.17% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.02% Class_I/LINE:LINE-RT
pair_completeness 0.56975697569757
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0349971313826736
satellite_probability 1.3998528815492e-19
consensus None
TAREAN_annotation Other
orientation_score 0.999967677812434

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 1730
S4 1780
S7 6
S9 2
S6 1700
S2 5
S1 1
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 1.5 1.0 0.0 0.0 3.5 0.0 0.0 0
S5 1.5 6890.0 6980.0 18.5 21.0 6450.0 18.5 2.0 0
S4 1.0 6980.0 7710.0 20.0 29.0 6830.0 29.5 4.5 0
S7 0.0 18.5 20.0 2.0 0.0 21.0 0.0 0.0 0
S9 0.0 21.0 29.0 0.0 0.0 23.5 0.0 0.0 0
S6 3.5 6450.0 6830.0 21.0 23.5 6350.0 17.5 0.0 0
S2 0.0 18.5 29.5 0.0 0.0 17.5 0.0 0.0 0
S1 0.0 2.0 4.5 0.0 0.0 0.0 0.0 0.0 0
S3 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.759 0.478 0.000 0.000 1.830 0.000 0.000 NA
S5 0.759 1.030 0.981 0.913 0.867 0.995 0.857 0.934 NA
S4 0.478 0.981 1.020 0.932 1.130 0.993 1.290 1.980 NA
S7 0.000 0.913 0.932 32.700 0.000 1.070 0.000 0.000 NA
S9 0.000 0.867 1.130 0.000 0.000 1.000 0.000 0.000 NA
S6 1.830 0.995 0.993 1.070 1.000 1.010 0.840 0.000 NA
S2 0.000 0.857 1.290 0.000 0.000 0.840 0.000 0.000 NA
S1 0.000 0.934 1.980 0.000 0.000 0.000 0.000 0.000 NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 9 0.00172
plastid plastid 9 0.00172
LINE LINE-RT LINE LINE-RT 1 0.00019
Gymco-I Ty1-INT Gymco-I Ty1-INT 1 0.00019

clusters with similarity:

Cluster Number of similarity hits
19 342
15 269
66 68
49 23
34 9
184 4
41 1
61 1
82 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
19 236 0.0973
15 95 0.0318
66 88 0.0583
82 30 0.0222
49 23 0.0102
25 18 0.0122
3 8 0.00226
6 8 0.00238
29 8 0.00456
1150 8 0.011
220 7 0.00849
184 6 0.00607
41 5 0.00383
48 5 0.00296
34 4 0.00211
39 4 0.00239
61 4 0.00257
67 4 0.00254
14 3 0.00129
37 3 0.00206
43 3 0.00152
297 3 0.00386
1220 3 0.00416
1610 3 0.00416
2020 3 0.00417
4920 3 0.00417
18800 3 0.00418
20 2 0.00123
86 2 0.00164
89 2 0.00168
90 2 0.00144
117 2 0.00184
128 2 0.00149
141 2 0.00224
1450 2 0.00276
5030 2 0.00278
7070 2 0.00278
10300 2 0.00279
10700 2 0.00279
10900 2 0.00279
16600 2 0.00278
27800 2 0.00279
31200 2 0.00279
38200 2 0.00279
45700 2 0.00279
69700 2 0.00279
70500 2 0.00279
10 1 0.000435
13 1 0.000446
24 1 0.000749
28 1 0.000571
31 1 0.000682
35 1 0.00059
44 1 0.000636
56 1 0.000747
63 1 0.000907
80 1 0.000686
81 1 0.000921
84 1 0.000684
87 1 0.000747
100 1 0.000873
111 1 0.00111
118 1 0.000857
132 1 0.00119
135 1 0.00106
142 1 0.0011
146 1 0.000808
181 1 0.000918
185 1 0.00101
186 1 0.00122
211 1 0.00111
353 1 0.00134
369 1 0.00132
499 1 0.00137
541 1 0.00135
750 1 0.00138
897 1 0.00138
2100 1 0.00139
2290 1 0.00139
2310 1 0.00139
2600 1 0.00139
3810 1 0.00139
3950 1 0.00139
4300 1 0.00139
4610 1 0.00139
4780 1 0.00139
4980 1 0.00139
5520 1 0.00139
5840 1 0.00139
8130 1 0.00139
8160 1 0.00139
10300 1 0.00139
11200 1 0.00139
11800 1 0.00139
11900 1 0.00139
12700 1 0.00139
13700 1 0.00139
14600 1 0.00139
14800 1 0.00139
16900 1 0.00139
17000 1 0.00139
17100 1 0.00139
17400 1 0.00139
17700 1 0.00139
17900 1 0.00139
18000 1 0.00139
20000 1 0.00139
20400 1 0.00139
26800 1 0.00139
28800 1 0.00139
29400 1 0.00139
29500 1 0.00139
29600 1 0.00139
31700 1 0.00139
32500 1 0.00139
33100 1 0.00139
39000 1 0.00139
39400 1 0.00139
40600 1 0.00139
42700 1 0.00139
42800 1 0.00139
44500 1 0.00139
48700 1 0.00139
54500 1 0.00139
57600 1 0.00139
58600 1 0.00139
58700 1 0.00139
60400 1 0.00139
61600 1 0.00139
62500 1 0.00139
64400 1 0.00139
65100 1 0.00139
65300 1 0.00139
65500 1 0.00139
66500 1 0.00139
66800 1 0.00139
69000 1 0.00139
69400 1 0.00139
70200 1 0.00139
70300 1 0.00139
70400 1 0.00139

CL55 ----> CL19

image

No. of shared pairs: :236

CL55 ----> CL15

image

No. of shared pairs: :95

CL55 ----> CL66

image

No. of shared pairs: :88

CL55 ----> CL82

image

No. of shared pairs: :30

CL55 ----> CL49

image

No. of shared pairs: :23

CL55 ----> CL25

image

No. of shared pairs: :18