Cluster no. 54

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Cluster is part of supercluster: 24

Cluster characteristics:

size 5257
size_real 5257
ecount 87981
supercluster 24
annotations_summary 0.11% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.517609699769053
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00114133536237398
satellite_probability 2.0897667525813e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1780
S5 11
S4 4
S7 1750
S9 1690
S6 10
S2 10
S1 7
S3 2
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 10100.0 89.0 24.0 9680.0 9740.0 16.0 49.5 11 0.5
S5 89.0 0.0 0.0 96.5 88.5 0.0 0.5 0 0.0
S4 24.0 0.0 0.0 21.0 28.5 0.5 0.0 0 0.0
S7 9680.0 96.5 21.0 9380.0 9420.0 13.0 58.5 9 1.0
S9 9740.0 88.5 28.5 9420.0 9600.0 9.5 53.0 14 0.0
S6 16.0 0.0 0.5 13.0 9.5 0.0 0.0 0 0.0
S2 49.5 0.5 0.0 58.5 53.0 0.0 1.0 0 0.0
S1 11.0 0.0 0.0 9.0 14.0 0.0 0.0 1 0.0
S3 0.5 0.0 0.0 1.0 0.0 0.0 0.0 0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.010 0.959 0.959 0.998 0.995 1.21 0.901 0.930 0.986
S5 0.959 0.000 0.000 1.080 0.979 0.00 0.986 0.000 0.000
S4 0.959 0.000 0.000 0.871 1.170 15.20 0.000 0.000 0.000
S7 0.998 1.080 0.871 1.000 0.998 1.02 1.100 0.789 2.050
S9 0.995 0.979 1.170 0.998 1.010 0.74 0.991 1.210 0.000
S6 1.210 0.000 15.200 1.020 0.740 0.00 0.000 0.000 0.000
S2 0.901 0.986 0.000 1.100 0.991 0.00 3.330 0.000 0.000
S1 0.930 0.000 0.000 0.789 1.210 0.00 0.000 71.800 0.000
S3 0.986 0.000 0.000 2.050 0.000 0.00 0.000 0.000 0.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 6 0.00114
SIRE Ty1-RT SIRE Ty1-RT 1 0.00019

clusters with similarity:

Cluster Number of similarity hits
36 135
22 33
198 19
140 15
17 11
68 3
11 2
8 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
36 58 0.0326
11 39 0.0188
140 38 0.0297
22 22 0.00893
8 13 0.0049
9 10 0.00652
46 10 0.00573
5 9 0.00334
21 9 0.00685
18 8 0.00382
75 8 0.00555
12 7 0.00345
1080 7 0.00828
453 6 0.00704
4 5 0.00206
65 5 0.00403
1130 5 0.00593
2050 5 0.00596
32 4 0.00281
68 4 0.00246
102 4 0.00333
198 4 0.00393
9060 4 0.00478
9730 4 0.00478
40 3 0.00213
51 3 0.00147
53 3 0.00216
78 3 0.00156
83 3 0.00248
157 3 0.00241
742 3 0.00355
1220 3 0.00355
4530 3 0.00358
4670 3 0.00358
4730 3 0.00358
8720 3 0.00358
17900 3 0.00358
17 2 0.000816
91 2 0.00134
100 2 0.00158
104 2 0.00196
107 2 0.00142
139 2 0.00182
166 2 0.00199
209 2 0.00208
1660 2 0.00238
3980 2 0.00239
4890 2 0.00239
5710 2 0.00239
5720 2 0.00239
5780 2 0.00239
9450 2 0.00239
12900 2 0.00239
13000 2 0.00239
15200 2 0.00239
15500 2 0.00239
17500 2 0.00239
19100 2 0.00239
23800 2 0.00239
23900 2 0.00239
25600 2 0.00239
27800 2 0.00239
31100 2 0.00239
34300 2 0.00239
35200 2 0.00239
40000 2 0.00239
47700 2 0.00239
50900 2 0.00239
60200 2 0.00239
64000 2 0.00239
67600 2 0.00239
59 1 0.000498
69 1 0.000511
74 1 0.000861
79 1 0.000954
103 1 0.00092
114 1 0.000846
124 1 0.000946
136 1 0.000676
172 1 0.00111
177 1 0.00105
199 1 0.00108
206 1 0.000983
213 1 0.00102
221 1 0.00106
244 1 0.00116
246 1 0.00108
256 1 0.0011
270 1 0.00111
280 1 0.00111
287 1 0.00112
347 1 0.00119
405 1 0.00117
473 1 0.00118
565 1 0.00118
580 1 0.00118
617 1 0.00117
805 1 0.00118
907 1 0.00118
1300 1 0.00119
1650 1 0.00119
1840 1 0.00119
1880 1 0.00119
1920 1 0.00119
1970 1 0.00119
2270 1 0.00119
2870 1 0.00119
2900 1 0.00119
3230 1 0.00119
3860 1 0.00119
4240 1 0.00119
5080 1 0.00119
6230 1 0.00119
6310 1 0.00119
6820 1 0.00119
7250 1 0.00119
7890 1 0.0012
8600 1 0.0012
8960 1 0.00119
10500 1 0.0012
11100 1 0.00119
14900 1 0.00119
15200 1 0.0012
15600 1 0.00119
15800 1 0.00119
17000 1 0.00119
18500 1 0.00119
18500 1 0.00119
18700 1 0.0012
18900 1 0.0012
19300 1 0.00119
19300 1 0.00119
20200 1 0.0012
20400 1 0.0012
25800 1 0.0012
26800 1 0.0012
27200 1 0.0012
29400 1 0.0012
29500 1 0.0012
30600 1 0.0012
31400 1 0.0012
31700 1 0.0012
32700 1 0.0012
32800 1 0.0012
34300 1 0.0012
34800 1 0.0012
35000 1 0.0012
36600 1 0.0012
39000 1 0.0012
39000 1 0.0012
39300 1 0.0012
40000 1 0.0012
40700 1 0.0012
41600 1 0.0012
42600 1 0.0012
43200 1 0.0012
45400 1 0.0012
46500 1 0.0012
47800 1 0.0012
48000 1 0.0012
48900 1 0.0012
49000 1 0.0012
49600 1 0.0012
51600 1 0.0012
51900 1 0.0012
51900 1 0.0012
52900 1 0.0012
54200 1 0.0012
54700 1 0.0012
57300 1 0.0012
58700 1 0.0012
58800 1 0.0012
59200 1 0.0012
60100 1 0.0012
60400 1 0.0012
60500 1 0.0012
62000 1 0.0012
62900 1 0.0012
63500 1 0.0012
63500 1 0.0012
65000 1 0.0012
65000 1 0.0012
66200 1 0.0012
68200 1 0.0012
68800 1 0.0012
69100 1 0.0012
70300 1 0.0012
70800 1 0.0012

CL54 ----> CL36

image

No. of shared pairs: :58

CL54 ----> CL11

image

No. of shared pairs: :39

CL54 ----> CL140

image

No. of shared pairs: :38

CL54 ----> CL22

image

No. of shared pairs: :22

CL54 ----> CL8

image

No. of shared pairs: :13

CL54 ----> CL9

image

No. of shared pairs: :10

CL54 ----> CL46

image

No. of shared pairs: :10