Cluster no. 51

Cluster no. 51

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Cluster is part of supercluster: 2

Cluster characteristics:

size	5720
size_real	5720
ecount	1442645
supercluster	2
annotations_summary	0.05% organelle/plastid 0.03% organelle/mitochondria
pair_completeness	0.406096361848574
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0276223776223776
satellite_probability	4.17629674469326e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1890
S5	12
S4	5
S7	1930
S9	1860
S6	6
S2	10
S1	7
S3	4

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	163000	776.0	230.0	162000	157000	226.0	614.0	788.0	383
S5	776	5.0	1.5	804	776	1.5	6.0	3.5	2
S4	230	1.5	0.0	195	187	0.0	0.0	0.5	0
S7	162000	804.0	195.0	162000	156000	241.0	632.0	796.0	386
S9	157000	776.0	187.0	156000	151000	220.0	596.0	787.0	356
S6	226	1.5	0.0	241	220	0.0	2.5	0.5	1
S2	614	6.0	0.0	632	596	2.5	3.0	3.5	1
S1	788	3.5	0.5	796	787	0.5	3.5	4.0	2
S3	383	2.0	0.0	386	356	1.0	1.0	2.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.000	0.973	1.120	1.000	1.000	0.970	0.985	0.984	1.010
S5	0.973	1.280	1.480	1.010	1.010	1.320	1.960	0.891	1.070
S4	1.120	1.480	0.000	0.948	0.943	0.000	0.000	0.492	0.000
S7	1.000	1.010	0.948	1.000	0.999	1.040	1.010	0.997	1.020
S9	1.000	1.010	0.943	0.999	1.000	0.986	0.993	1.020	0.974
S6	0.970	1.320	0.000	1.040	0.986	0.000	2.800	0.437	1.840
S2	0.985	1.960	0.000	1.010	0.993	2.800	1.250	1.140	0.687
S1	0.984	0.891	0.492	0.997	1.020	0.437	1.140	1.010	1.070
S3	1.010	1.070	0.000	1.020	0.974	1.840	0.687	1.070	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 2 0.00035

plastid plastid 3 0.00052

clusters with similarity:

Cluster	Number of similarity hits

69	28300
59	10900
248	19
78	4
4	1
106	1
157	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

59	1000	0.421
69	952	0.408
78	88	0.0383
18	29	0.0118
157	28	0.0173
248	17	0.0133
8	10	0.00331
22	10	0.00353
5	6	0.00196
91	5	0.00268
11	4	0.00163
17	4	0.00142
4	3	0.00107
9	3	0.00157
12	3	0.00125
54	3	0.00147
162	3	0.00176
36	2	0.000931
65	2	0.00124
106	2	0.00124
840	2	0.00165
10200	2	0.00165
68	1	0.000501
75	1	0.000551
79	1	0.000704
102	1	0.000635
182	1	0.000724
192	1	0.000723
193	1	0.000789
198	1	0.000719
247	1	8e-04
251	1	0.000771
265	1	0.000788
963	1	0.000822
1780	1	0.000825
2060	1	0.000824
2170	1	0.000825
3190	1	0.000826
5430	1	0.000826
6100	1	0.000826
12600	1	0.000827
16800	1	0.000827
18300	1	0.000827
21600	1	0.000827
36100	1	0.000827
38800	1	0.000827
45200	1	0.000827
49000	1	0.000827
53800	1	0.000827
69400	1	0.000827

CL51 ----> CL59

No. of shared pairs: :1004

CL51 ----> CL69

No. of shared pairs: :952

CL51 ----> CL78

No. of shared pairs: :88

CL51 ----> CL18

No. of shared pairs: :29

CL51 ----> CL157

No. of shared pairs: :28

CL51 ----> CL248

No. of shared pairs: :17

CL51 ----> CL8

No. of shared pairs: :10

CL51 ----> CL22

No. of shared pairs: :10