Cluster no. 49

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size	5886
size_real	5886
ecount	454140
supercluster	1
annotations_summary	0.07% organelle/mitochondria 0.05% organelle/plastid 0.02% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
pair_completeness	0.312960071380772
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0278627251104315
satellite_probability	5.73139024823994e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	8
S5	2050
S4	1890
S7	7
S9	3
S6	1930
S2	3
S1	1
S3	1

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	278.0	236	0.0	0.5	265.0	0.5	0.0	0.5
S5	278.0	55600.0	49500	79.5	102.0	53200.0	155.0	1.0	89.0
S4	236.0	49500.0	43300	56.0	87.0	47300.0	143.0	1.0	87.0
S7	0.0	79.5	56	0.0	0.0	54.5	0.0	0.0	0.5
S9	0.5	102.0	87	0.0	0.0	95.0	1.0	0.0	0.0
S6	265.0	53200.0	47300	54.5	95.0	51200.0	159.0	2.5	94.0
S2	0.5	155.0	143	0.0	1.0	159.0	0.0	0.0	0.5
S1	0.0	1.0	1	0.0	0.0	2.5	0.0	0.0	0.0
S3	0.5	89.0	87	0.5	0.0	94.0	0.5	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	1.020	0.975	0.000	1.020	1.010	0.633	0.000	1.070
S5	1.020	0.998	1.000	1.190	1.020	0.997	0.964	0.634	0.936
S4	0.975	1.000	0.994	0.949	0.982	1.000	1.010	0.717	1.030
S7	0.000	1.190	0.949	0.000	0.000	0.853	0.000	0.000	4.390
S9	1.020	1.020	0.982	0.000	0.000	0.990	3.460	0.000	0.000
S6	1.010	0.997	1.000	0.853	0.990	1.000	1.030	1.660	1.030
S2	0.633	0.964	1.010	0.000	3.460	1.030	0.000	0.000	1.820
S1	0.000	0.634	0.717	0.000	0.000	1.660	0.000	0.000	0.000
S3	1.070	0.936	1.030	4.390	0.000	1.030	1.820	0.000	0.000

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 4 0.00068

plastid plastid 3 0.00051

EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 1 0.00017

clusters with similarity:

Cluster	Number of similarity hits

20	6290
72	3940
45	2610
47	2270
161	1060
109	527
231	52
55	23
10	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

45	892	0.3
47	523	0.21
20	520	0.212
72	402	0.183
161	305	0.159
10	75	0.024
109	64	0.032
55	23	0.0102
231	16	0.00971
3	6	0.00138
29	6	0.00233
67	5	0.00209
48	4	0.00159
84	4	0.00175
4610	4	0.00259
6	3	0.000717
14	3	0.000953
86	3	0.00147
87	3	0.00139
13	2	0.000653
34	2	0.000736
141	2	0.00117
46700	2	0.0013
47500	2	0.0013
2	1	0.000324
16	1	0.000487
25	1	0.000436
28	1	0.000388
39	1	4e-04
40	1	0.000473
43	1	0.000357
61	1	0.000421
62	1	0.000511
63	1	0.000519
70	1	0.000537
76	1	0.00048
81	1	0.000524
90	1	0.000452
95	1	0.000479
118	1	0.000503
126	1	0.000513
134	1	0.000626
135	1	0.000568
142	1	0.000578
151	1	0.000508
164	1	0.000631
178	1	0.000578
369	1	0.000634
378	1	0.000639
1140	1	0.000646
3190	1	0.000649
3760	1	0.000648
7350	1	0.000649
7740	1	0.000649
18600	1	0.000649
29900	1	0.000649
30000	1	0.000649
40900	1	0.000649
44800	1	0.000649
48500	1	0.000649
55000	1	0.000649
65900	1	0.000649
66300	1	0.000649
66600	1	0.000649
69300	1	0.000649