Cluster no. 47

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size 5955
size_real 5955
ecount 295100
supercluster 1
annotations_summary 0.10% organelle/plastid
0.02% Class_I/LINE:LINE-RT
pair_completeness 0.516038696537678
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.125608732157851
satellite_probability 1.0175335522201e-14
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 8
S5 1900
S4 1990
S7 4
S9 6
S6 2040
S2 2
S1 3
S3 8
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.0 34 47.0 0.0 0 43.0 0.0 0.0 0.5
S5 34.0 31800 32600.0 41.0 143 32000.0 7.0 96.0 148.0
S4 47.0 32600 33700.0 44.0 140 32700.0 2.5 74.5 148.0
S7 0.0 41 44.0 0.0 0 40.0 0.0 0.5 0.0
S9 0.0 143 140.0 0.0 2 158.0 0.0 1.0 0.0
S6 43.0 32000 32700.0 40.0 158 32000.0 8.5 94.0 130.0
S2 0.0 7 2.5 0.0 0 8.5 0.0 0.0 0.5
S1 0.0 96 74.5 0.5 1 94.0 0.0 1.0 1.0
S3 0.5 148 148.0 0.0 0 130.0 0.5 1.0 1.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 18.700 0.825 1.110 0.000 0.000 1.040 0.000 0.000 2.750
S5 0.825 0.999 0.998 0.995 0.979 1.000 1.150 1.090 1.050
S4 1.110 0.998 1.000 1.040 0.934 0.998 0.401 0.824 1.020
S7 0.000 0.995 1.040 0.000 0.000 0.967 0.000 4.390 0.000
S9 0.000 0.979 0.934 0.000 2.990 1.080 0.000 2.480 0.000
S6 1.040 1.000 0.998 0.967 1.080 1.000 1.390 1.060 0.922
S2 0.000 1.150 0.401 0.000 0.000 1.390 0.000 0.000 18.600
S1 0.000 1.090 0.824 4.390 2.480 1.060 0.000 4.110 2.570
S3 2.750 1.050 1.020 0.000 0.000 0.922 18.600 2.570 1.610

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 6 0.00101
LINE LINE-RT LINE LINE-RT 1 0.00017

clusters with similarity:

Cluster Number of similarity hits
49 2270
72 998
161 851
109 52
6 1
216 1
437 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
49 523 0.21
72 150 0.0932
109 121 0.0857
161 43 0.0325
437 22 0.0226
45 20 0.0084
14 8 0.00313
67 8 0.00443
3 6 0.00159
10 6 0.00237
6 4 0.00111
48 4 0.00208
84 4 0.00236
216 4 0.00373
231 4 0.00378
20 3 0.00161
4940 3 0.00315
5030 3 0.00315
6270 3 0.00315
8790 3 0.00315
14100 3 0.00315
1 2 0.000749
13 2 0.000809
16 2 0.00137
29 2 0.00101
34 2 0.00094
81 2 0.00152
82 2 0.00126
141 2 0.00177
369 2 0.00202
4960 2 0.0021
5560 2 0.0021
5670 2 0.0021
6250 2 0.0021
9880 2 0.0021
10900 2 0.0021
12300 2 0.0021
13100 2 0.0021
13700 2 0.0021
14200 2 0.0021
18700 2 0.0021
20400 2 0.0021
23700 2 0.0021
24200 2 0.0021
26600 2 0.0021
31900 2 0.0021
37100 2 0.0021
37300 2 0.0021
41800 2 0.0021
46400 2 0.0021
50800 2 0.0021
53800 2 0.0021
54000 2 0.0021
56200 2 0.0021
57100 2 0.0021
58300 2 0.0021
59800 2 0.0021
60300 2 0.0021
62700 2 0.0021
66600 2 0.0021
66700 2 0.0021
69000 2 0.0021
2 1 4e-04
15 1 0.00031
19 1 0.000376
25 1 0.000587
28 1 0.000504
39 1 0.000524
41 1 0.00065
52 1 0.000666
56 1 0.000636
63 1 0.000748
70 1 0.000785
74 1 0.000783
80 1 0.000592
89 1 0.000703
94 1 0.000776
117 1 0.000758
118 1 0.000714
128 1 0.000636
130 1 0.000737
186 1 0.000947
204 1 0.00103
237 1 0.000976
252 1 0.00097
279 1 0.000999
862 1 0.00104
1170 1 0.00104
1670 1 0.00105
3820 1 0.00105
4160 1 0.00105
5550 1 0.00105
5800 1 0.00105
6620 1 0.00105
7000 1 0.00105
7880 1 0.00105
8090 1 0.00105
8510 1 0.00105
9160 1 0.00105
9450 1 0.00105
10400 1 0.00105
11800 1 0.00105
12800 1 0.00105
12900 1 0.00105
13400 1 0.00105
14300 1 0.00105
15200 1 0.00105
15800 1 0.00105
17000 1 0.00105
18100 1 0.00105
18400 1 0.00105
18500 1 0.00105
19200 1 0.00105
19500 1 0.00105
21700 1 0.00105
21700 1 0.00105
26400 1 0.00105
27500 1 0.00105
27500 1 0.00105
27800 1 0.00105
28000 1 0.00105
28400 1 0.00105
29200 1 0.00105
32800 1 0.00105
32900 1 0.00105
33300 1 0.00105
34800 1 0.00105
35600 1 0.00105
37500 1 0.00105
38600 1 0.00105
40300 1 0.00105
40500 1 0.00105
41500 1 0.00105
42500 1 0.00105
43100 1 0.00105
43500 1 0.00105
44100 1 0.00105
45900 1 0.00105
46700 1 0.00105
47400 1 0.00105
47600 1 0.00105
47700 1 0.00105
49600 1 0.00105
50700 1 0.00105
53200 1 0.00105
53200 1 0.00105
53400 1 0.00105
54300 1 0.00105
57800 1 0.00105
58100 1 0.00105
58600 1 0.00105
58600 1 0.00105
59200 1 0.00105
60700 1 0.00105
62800 1 0.00105
63400 1 0.00105
65000 1 0.00105
65800 1 0.00105
66500 1 0.00105
66500 1 0.00105
66600 1 0.00105
67400 1 0.00105
68000 1 0.00105
68800 1 0.00105

CL47 ----> CL49

image

No. of shared pairs: :523

CL47 ----> CL72

image

No. of shared pairs: :150

CL47 ----> CL109

image

No. of shared pairs: :121

CL47 ----> CL161

image

No. of shared pairs: :43

CL47 ----> CL437

image

No. of shared pairs: :22

CL47 ----> CL45

image

No. of shared pairs: :20