Cluster no. 46
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Cluster is part of supercluster: 5
Cluster characteristics:
| size |
6034 |
| size_real |
6034 |
| ecount |
389941 |
| supercluster |
5 |
| annotations_summary |
|
| pair_completeness |
0.536150712830957 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00596619158104077 |
| satellite_probability |
5.9149989235368e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
32 |
| S5 |
7 |
| S4 |
9 |
| S7 |
42 |
| S9 |
60 |
| S6 |
9 |
| S2 |
1880 |
| S1 |
1960 |
| S3 |
2030 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
25.0 |
0.0 |
0.5 |
40.0 |
34.0 |
0.0 |
113.0 |
113.0 |
117.0 |
| S5 |
0.0 |
0.0 |
0.5 |
0.0 |
1.5 |
0.5 |
146.0 |
171.0 |
172.0 |
| S4 |
0.5 |
0.5 |
1.0 |
0.5 |
1.5 |
0.0 |
204.0 |
228.0 |
221.0 |
| S7 |
40.0 |
0.0 |
0.5 |
45.0 |
63.5 |
0.0 |
41.5 |
53.5 |
46.0 |
| S9 |
34.0 |
1.5 |
1.5 |
63.5 |
81.0 |
0.0 |
211.0 |
256.0 |
258.0 |
| S6 |
0.0 |
0.5 |
0.0 |
0.0 |
0.0 |
1.0 |
70.0 |
84.5 |
74.5 |
| S2 |
113.0 |
146.0 |
204.0 |
41.5 |
211.0 |
70.0 |
37000.0 |
41400.0 |
40900.0 |
| S1 |
113.0 |
171.0 |
228.0 |
53.5 |
256.0 |
84.5 |
41400.0 |
46100.0 |
45800.0 |
| S3 |
117.0 |
172.0 |
221.0 |
46.0 |
258.0 |
74.5 |
40900.0 |
45800.0 |
45000.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
49.800 |
0.000 |
0.672 |
122.000 |
33.100 |
0.000 |
0.829 |
0.742 |
0.777 |
| S5 |
0.000 |
0.000 |
0.606 |
0.000 |
1.320 |
1.720 |
0.963 |
1.010 |
1.030 |
| S4 |
0.672 |
0.606 |
0.906 |
1.020 |
0.984 |
0.000 |
1.010 |
1.010 |
0.991 |
| S7 |
122.000 |
0.000 |
1.020 |
209.000 |
94.200 |
0.000 |
0.465 |
0.536 |
0.466 |
| S9 |
33.100 |
1.320 |
0.984 |
94.200 |
38.400 |
0.000 |
0.756 |
0.819 |
0.838 |
| S6 |
0.000 |
1.720 |
0.000 |
0.000 |
0.000 |
7.340 |
0.986 |
1.070 |
0.950 |
| S2 |
0.829 |
0.963 |
1.010 |
0.465 |
0.756 |
0.986 |
1.000 |
1.000 |
1.000 |
| S1 |
0.742 |
1.010 |
1.010 |
0.536 |
0.819 |
1.070 |
1.000 |
0.999 |
1.000 |
| S3 |
0.777 |
1.030 |
0.991 |
0.466 |
0.838 |
0.950 |
1.000 |
1.000 |
0.998 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 27 |
4790 |
| 8 |
3440 |
| 210 |
73 |
| 110 |
55 |
| 143 |
3 |
| 256 |
3 |
| 275 |
2 |
| 57 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 27 |
671 |
0.377 |
| 110 |
188 |
0.122 |
| 210 |
107 |
0.0956 |
| 275 |
26 |
0.0267 |
| 57 |
22 |
0.0129 |
| 143 |
19 |
0.0143 |
| 256 |
19 |
0.0193 |
| 8 |
13 |
0.00477 |
| 54 |
10 |
0.00573 |
| 7 |
6 |
0.00255 |
| 23 |
6 |
0.00294 |
| 2460 |
6 |
0.00655 |
| 2950 |
6 |
0.00655 |
| 85 |
5 |
0.00353 |
| 129 |
5 |
0.00437 |
| 5100 |
5 |
0.00547 |
| 42 |
4 |
0.00268 |
| 153 |
4 |
0.00305 |
| 30 |
3 |
0.00156 |
| 58 |
3 |
0.00202 |
| 96 |
3 |
0.00206 |
| 116 |
3 |
0.0024 |
| 125 |
3 |
0.00215 |
| 174 |
3 |
0.0027 |
| 6050 |
3 |
0.00328 |
| 6940 |
3 |
0.00328 |
| 8780 |
3 |
0.00329 |
| 38 |
2 |
0.00103 |
| 77 |
2 |
0.00174 |
| 108 |
2 |
0.00151 |
| 111 |
2 |
0.00183 |
| 113 |
2 |
0.00155 |
| 124 |
2 |
0.00177 |
| 147 |
2 |
0.00148 |
| 168 |
2 |
0.00164 |
| 235 |
2 |
0.00201 |
| 327 |
2 |
0.0021 |
| 4800 |
2 |
0.00219 |
| 7550 |
2 |
0.00219 |
| 8540 |
2 |
0.00219 |
| 9840 |
2 |
0.00219 |
| 15700 |
2 |
0.00219 |
| 16600 |
2 |
0.00219 |
| 20800 |
2 |
0.00219 |
| 26900 |
2 |
0.00219 |
| 35500 |
2 |
0.00219 |
| 35600 |
2 |
0.00219 |
| 39900 |
2 |
0.00219 |
| 48500 |
2 |
0.00219 |
| 51200 |
2 |
0.00219 |
| 64800 |
2 |
0.00219 |
| 4 |
1 |
0.000399 |
| 5 |
1 |
0.000361 |
| 64 |
1 |
0.000576 |
| 98 |
1 |
0.000754 |
| 131 |
1 |
0.000799 |
| 140 |
1 |
0.000739 |
| 148 |
1 |
0.000779 |
| 152 |
1 |
0.000785 |
| 177 |
1 |
0.000974 |
| 196 |
1 |
0.000937 |
| 202 |
1 |
0.00101 |
| 229 |
1 |
0.000961 |
| 239 |
1 |
0.000967 |
| 435 |
1 |
0.00108 |
| 441 |
1 |
0.00107 |
| 450 |
1 |
0.00108 |
| 562 |
1 |
0.00108 |
| 782 |
1 |
0.00108 |
| 908 |
1 |
0.00109 |
| 947 |
1 |
0.00109 |
| 998 |
1 |
0.00109 |
| 1030 |
1 |
0.00109 |
| 1260 |
1 |
0.00109 |
| 2100 |
1 |
0.00109 |
| 3070 |
1 |
0.00109 |
| 3160 |
1 |
0.00109 |
| 6720 |
1 |
0.00109 |
| 6930 |
1 |
0.0011 |
| 7430 |
1 |
0.0011 |
| 8300 |
1 |
0.0011 |
| 9190 |
1 |
0.0011 |
| 9380 |
1 |
0.0011 |
| 11000 |
1 |
0.0011 |
| 11800 |
1 |
0.0011 |
| 12300 |
1 |
0.0011 |
| 14200 |
1 |
0.0011 |
| 14400 |
1 |
0.0011 |
| 14800 |
1 |
0.0011 |
| 16300 |
1 |
0.0011 |
| 16800 |
1 |
0.0011 |
| 16900 |
1 |
0.0011 |
| 19200 |
1 |
0.0011 |
| 26400 |
1 |
0.0011 |
| 26900 |
1 |
0.0011 |
| 28100 |
1 |
0.0011 |
| 29300 |
1 |
0.0011 |
| 40500 |
1 |
0.0011 |
| 44500 |
1 |
0.0011 |
| 45600 |
1 |
0.0011 |
| 48000 |
1 |
0.0011 |
| 48900 |
1 |
0.0011 |
| 49900 |
1 |
0.0011 |
| 50100 |
1 |
0.0011 |
| 53500 |
1 |
0.0011 |
| 56400 |
1 |
0.0011 |
| 57200 |
1 |
0.0011 |
| 57700 |
1 |
0.0011 |
| 57900 |
1 |
0.0011 |
| 59000 |
1 |
0.0011 |
| 63800 |
1 |
0.0011 |
| 64700 |
1 |
0.0011 |
| 65800 |
1 |
0.0011 |
| 68800 |
1 |
0.0011 |
| 69000 |
1 |
0.0011 |
| 69400 |
1 |
0.0011 |
| 69500 |
1 |
0.0011 |
|
CL46 ----> CL27
No. of shared pairs: :671
CL46 ----> CL110
No. of shared pairs: :188
CL46 ----> CL210
No. of shared pairs: :107
CL46 ----> CL275
No. of shared pairs: :26
CL46 ----> CL57
No. of shared pairs: :22
CL46 ----> CL143
No. of shared pairs: :19
CL46 ----> CL256
No. of shared pairs: :19
CL46 ----> CL8
No. of shared pairs: :13
CL46 ----> CL54
No. of shared pairs: :10