Cluster no. 43

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Cluster is part of supercluster: 20

Cluster characteristics:

size 6457
size_real 6457
ecount 40283
supercluster 20
annotations_summary 3.22% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.59% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
pair_completeness 0.439366919304503
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000464612048939136
satellite_probability 4.69379822868744e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 3
S5 2120
S4 2170
S7 5
S9 5
S6 2150
S2 6
S1 3
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 4.0 2.0 0.0 0.0 5.0 0.0 0.0 0
S5 4 4400.0 4540.0 15.5 33.5 4200.0 14.0 1.5 0
S4 2 4540.0 4970.0 14.5 33.5 4440.0 10.5 1.5 0
S7 0 15.5 14.5 0.0 0.0 9.5 0.0 0.0 0
S9 0 33.5 33.5 0.0 0.0 35.0 0.0 0.0 0
S6 5 4200.0 4440.0 9.5 35.0 4150.0 11.5 4.0 0
S2 0 14.0 10.5 0.0 0.0 11.5 1.0 0.0 0
S1 0 1.5 1.5 0.0 0.0 4.0 0.0 1.0 0
S3 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 1.110 0.523 0.000 0.000 1.420 0.000 0.000 NA
S5 1.110 1.020 0.988 1.200 1.000 0.996 1.150 0.572 NA
S4 0.523 0.988 1.020 1.060 0.944 0.993 0.816 0.539 NA
S7 0.000 1.200 1.060 0.000 0.000 0.753 0.000 0.000 NA
S9 0.000 1.000 0.944 0.000 0.000 1.070 0.000 0.000 NA
S6 1.420 0.996 0.993 0.753 1.070 1.010 0.974 1.570 NA
S2 0.000 1.150 0.816 0.000 0.000 0.974 29.400 0.000 NA
S1 0.000 0.572 0.539 0.000 0.000 1.570 0.000 629.000 NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Angela Ty1-RT Angela Ty1-RT 1 0.00015
Tekay Ty3-CHDII Tekay Ty3-CHDII 208 0.03221
Tekay Ty3-INT Tekay Ty3-INT 38 0.00589
Tekay Ty3-RH Tekay Ty3-RH 1 0.00015
TatV Ty3-RT TatV Ty3-RT 1 0.00015
Tcn1 Ty3-RT Tcn1 Ty3-RT 1 0.00015
Tekay Ty3-RT Tekay Ty3-RT 1 0.00015

clusters with similarity:

Cluster Number of similarity hits
62 28
28 8
159 6
71 2
302 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
28 79 0.0345
159 54 0.0347
71 34 0.0156
62 32 0.0191
720 12 0.00943
302 11 0.00854
3 10 0.00245
1480 9 0.00711
2630 9 0.00713
1590 7 0.00554
87 6 0.00319
825 6 0.00473
6 5 0.00128
19 5 0.00169
31 5 0.00249
39 5 0.00226
48 5 0.00224
95 5 0.00277
2860 5 0.00396
3260 5 0.00396
3980 5 0.00397
7390 5 0.00397
14 4 0.0014
29 4 0.00174
52 4 0.00221
67 4 0.00189
88 4 0.00209
92 4 0.00234
2000 4 0.00317
3110 4 0.00317
3480 4 0.00317
4460 4 0.00317
4580 4 0.00318
5750 4 0.00317
7180 4 0.00317
7510 4 0.00318
13 3 0.00108
34 3 0.00123
37 3 0.0015
55 3 0.00152
56 3 0.0016
74 3 0.00189
99 3 0.00169
100 3 0.00178
105 3 0.00168
123 3 0.00164
1280 3 0.00237
1580 3 0.00237
3020 3 0.00238
3340 3 0.00238
5260 3 0.00238
5710 3 0.00238
7990 3 0.00238
8670 3 0.00238
17000 3 0.00238
1 2 0.000672
10 2 0.000705
25 2 0.000994
61 2 0.000955
82 2 0.00106
117 2 0.00123
126 2 0.0012
128 2 0.00106
141 2 0.00139
252 2 0.00149
1490 2 0.00158
1800 2 0.00158
2310 2 0.00159
3550 2 0.00159
3940 2 0.00159
4000 2 0.00159
4370 2 0.00159
4490 2 0.00159
4960 2 0.00159
6140 2 0.00159
6290 2 0.00159
7960 2 0.00159
8320 2 0.00159
8660 2 0.00159
8990 2 0.00159
10100 2 0.00159
10100 2 0.00159
10100 2 0.00159
10600 2 0.00159
11100 2 0.00159
11300 2 0.00159
11600 2 0.00159
12000 2 0.00159
12600 2 0.00159
13800 2 0.00159
14000 2 0.00159
14300 2 0.00159
15000 2 0.00159
15000 2 0.00159
15700 2 0.00159
17200 2 0.00159
17700 2 0.00159
18600 2 0.00159
19200 2 0.00159
19300 2 0.00159
19400 2 0.00159
19400 2 0.00159
22300 2 0.00159
22800 2 0.00159
22900 2 0.00159
23900 2 0.00159
24100 2 0.00159
28100 2 0.00159
29100 2 0.00159
30300 2 0.00159
31000 2 0.00159
32800 2 0.00159
33800 2 0.00159
44900 2 0.00159
45700 2 0.00159
46300 2 0.00159
47700 2 0.00159
48300 2 0.00159
48600 2 0.00159
49200 2 0.00159
50500 2 0.00159
54900 2 0.00159
59400 2 0.00159
60300 2 0.00159
62800 2 0.00159
63400 2 0.00159
64000 2 0.00159
64400 2 0.00159
64900 2 0.00159
66400 2 0.00159
67200 2 0.00159
68000 2 0.00159
69800 2 0.00159
2 1 0.000357
15 1 0.000283
20 1 0.000461
24 1 0.000533
26 1 0.000458
33 1 0.000332
35 1 0.000448
44 1 0.000473
45 1 0.000372
49 1 0.000357
60 1 0.000446
70 1 0.000633
73 1 0.00054
80 1 0.000501
84 1 0.000499
86 1 0.000569
89 1 0.000578
90 1 0.000519
94 1 0.000627
101 1 0.000576
109 1 0.000582
115 1 0.000511
120 1 0.000603
132 1 0.000726
133 1 0.000751
135 1 0.000676
142 1 0.000691
146 1 0.000562
155 1 0.000688
208 1 0.000693
211 1 0.000696
257 1 0.000766
266 1 0.000776
360 1 0.000782
361 1 0.000785
363 1 0.000784
369 1 0.000772
463 1 0.000787
1080 1 0.000789
1280 1 0.000793
1460 1 0.000792
1530 1 0.000792
1710 1 0.000792
1980 1 0.000791
2140 1 0.000793
2440 1 0.000793
2640 1 0.000794
2660 1 0.000793
2660 1 0.000793
2680 1 0.000794
3130 1 0.000794
3340 1 0.000793
3660 1 0.000793
3670 1 0.000793
3770 1 0.000794
3810 1 0.000793
3840 1 0.000794
4050 1 0.000793
4080 1 0.000794
4260 1 0.000794
4370 1 0.000794
4470 1 0.000793
4860 1 0.000793
5110 1 0.000794
5200 1 0.000793
5230 1 0.000794
5340 1 0.000794
5780 1 0.000795
5810 1 0.000794
6130 1 0.000794
6480 1 0.000794
6650 1 0.000794
6750 1 0.000794
6840 1 0.000794
7090 1 0.000794
7180 1 0.000794
7370 1 0.000794
7720 1 0.000795
8390 1 0.000794
8820 1 0.000794
9450 1 0.000795
9680 1 0.000794
9900 1 0.000794
10100 1 0.000795
10100 1 0.000795
10200 1 0.000794
10600 1 0.000794
10600 1 0.000795
10900 1 0.000794
10900 1 0.000794
11000 1 0.000794
11100 1 0.000794
11100 1 0.000794
11200 1 0.000795
11300 1 0.000794
11500 1 0.000795
11600 1 0.000794
11600 1 0.000794
11700 1 0.000794
12800 1 0.000794
13400 1 0.000794
13400 1 0.000794
13400 1 0.000794
13500 1 0.000794
13800 1 0.000795
13800 1 0.000795
14400 1 0.000794
14600 1 0.000794
14600 1 0.000795
14700 1 0.000794
14900 1 0.000794
14900 1 0.000795
15600 1 0.000794
15600 1 0.000794
15700 1 0.000795
16100 1 0.000795
16400 1 0.000794
16600 1 0.000795
16700 1 0.000794
16800 1 0.000794
16900 1 0.000795
17300 1 0.000794
17400 1 0.000794
17500 1 0.000794
18100 1 0.000794
18900 1 0.000794
19100 1 0.000794
19300 1 0.000794
21000 1 0.000795
21500 1 0.000795
23000 1 0.000795
23700 1 0.000795
24600 1 0.000795
24800 1 0.000795
24800 1 0.000795
27200 1 0.000795
28000 1 0.000795
28200 1 0.000795
28400 1 0.000795
28400 1 0.000795
28600 1 0.000795
28800 1 0.000795
28900 1 0.000795
29100 1 0.000795
29400 1 0.000795
30400 1 0.000795
31000 1 0.000795
31500 1 0.000795
33000 1 0.000795
33000 1 0.000795
33000 1 0.000795
34000 1 0.000795
34000 1 0.000795
34300 1 0.000795
34500 1 0.000795
36300 1 0.000795
36400 1 0.000795
37900 1 0.000795
39000 1 0.000795
39000 1 0.000795
39300 1 0.000795
40400 1 0.000795
41700 1 0.000795
42100 1 0.000795
42700 1 0.000795
43900 1 0.000795
44100 1 0.000795
44900 1 0.000795
45200 1 0.000795
45600 1 0.000795
47900 1 0.000795
49300 1 0.000795
49500 1 0.000795
49800 1 0.000795
50800 1 0.000795
51000 1 0.000795
51100 1 0.000795
51400 1 0.000795
51500 1 0.000795
52100 1 0.000795
53500 1 0.000795
54000 1 0.000795
54100 1 0.000795
54300 1 0.000795
54800 1 0.000795
55100 1 0.000795
55400 1 0.000795
55600 1 0.000795
55800 1 0.000795
55800 1 0.000795
56200 1 0.000795
56600 1 0.000795
57600 1 0.000795
57600 1 0.000795
57800 1 0.000795
58300 1 0.000795
58500 1 0.000795
58700 1 0.000795
60200 1 0.000795
61300 1 0.000795
61400 1 0.000795
61600 1 0.000795
64100 1 0.000795
64700 1 0.000795
65200 1 0.000795
65700 1 0.000795
65800 1 0.000795
66500 1 0.000795
67000 1 0.000795
67400 1 0.000795
68500 1 0.000795
68600 1 0.000795
69200 1 0.000795
70000 1 0.000795
70300 1 0.000795

CL43 ----> CL28

image

No. of shared pairs: :79

CL43 ----> CL159

image

No. of shared pairs: :54

CL43 ----> CL71

image

No. of shared pairs: :34

CL43 ----> CL62

image

No. of shared pairs: :32

CL43 ----> CL720

image

No. of shared pairs: :12

CL43 ----> CL302

image

No. of shared pairs: :11

CL43 ----> CL3

image

No. of shared pairs: :10