Cluster no. 41

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Cluster is part of supercluster: 12

Cluster characteristics:

size 6600
size_real 6600
ecount 247611
supercluster 12
annotations_summary 0.06% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
pair_completeness 0.697094368732322
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.09
satellite_probability 1.91457577178322e-17
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 4
S5 2100
S4 2310
S7 4
S9 3
S6 2160
S2 10
S1 4
S3 2
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.0 19.5 19.0 0.0 0.0 16.0 0.0 0.0 0.0
S5 19.5 24900.0 27200.0 61.5 31.0 25900.0 89.5 123.0 41.0
S4 19.0 27200.0 30300.0 65.5 44.5 28500.0 105.0 129.0 39.0
S7 0.0 61.5 65.5 0.0 0.0 50.0 0.5 0.5 0.0
S9 0.0 31.0 44.5 0.0 0.0 40.5 0.0 0.0 0.0
S6 16.0 25900.0 28500.0 50.0 40.5 27000.0 88.5 129.0 38.0
S2 0.0 89.5 105.0 0.5 0.0 88.5 3.0 0.0 0.5
S1 0.0 123.0 129.0 0.5 0.0 129.0 0.0 1.0 0.0
S3 0.0 41.0 39.0 0.0 0.0 38.0 0.5 0.0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 80.400 1.110 0.981 0.000 0.000 0.874 0.000 0.000 0.000
S5 1.110 1.000 0.996 1.090 0.845 1.000 0.986 1.020 1.090
S4 0.981 0.996 1.000 1.050 1.100 0.999 1.050 0.966 0.943
S7 0.000 1.090 1.050 0.000 0.000 0.851 2.420 1.820 0.000
S9 0.000 0.845 1.100 0.000 0.000 1.060 0.000 0.000 0.000
S6 0.874 1.000 0.999 0.851 1.060 1.000 0.934 1.020 0.972
S2 0.000 0.986 1.050 2.420 0.000 0.934 9.020 0.000 3.640
S1 0.000 1.020 0.966 1.820 0.000 1.020 0.000 1.690 0.000
S3 0.000 1.090 0.943 0.000 0.000 0.972 3.640 0.000 0.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 4 0.00061
Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00015

clusters with similarity:

Cluster Number of similarity hits
73 1260
238 52
185 19
37 4
55 1
211 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
73 360 0.304
37 121 0.0909
238 79 0.114
185 61 0.0704
216 10 0.0141
67 8 0.00554
80 7 0.00527
941 7 0.0117
55 5 0.00383
3040 5 0.00843
3 4 0.00117
1660 4 0.00673
1840 4 0.00672
11000 4 0.00677
621 3 0.00503
2750 3 0.00506
3250 3 0.00508
3480 3 0.00506
3920 3 0.00506
3960 3 0.00507
5470 3 0.00507
6900 3 0.00507
13100 3 0.00508
6 2 0.000619
10 2 0.000922
56 2 0.00165
84 2 0.0015
141 2 0.00261
178 2 0.00257
1060 2 0.00336
2430 2 0.00337
2880 2 0.00338
4520 2 0.00338
5180 2 0.00338
7090 2 0.00338
7600 2 0.00339
7880 2 0.00338
8950 2 0.00338
13600 2 0.00339
17900 2 0.00339
28200 2 0.00339
30800 2 0.00339
31600 2 0.00339
33600 2 0.00339
36700 2 0.00339
37500 2 0.00339
38000 2 0.00339
38100 2 0.00339
46100 2 0.00339
49700 2 0.00339
51200 2 0.00339
67800 2 0.00339
68800 2 0.00339
1 1 0.000433
13 1 0.000473
14 1 0.000455
16 1 0.000907
25 1 0.000745
26 1 0.00066
29 1 0.000614
33 1 0.000426
34 1 0.000566
39 1 0.000646
44 1 0.000692
47 1 0.00065
48 1 0.00064
61 1 0.000701
63 1 0.00103
76 1 0.000885
81 1 0.00104
87 1 0.000826
88 1 0.000806
119 1 0.00114
146 1 0.000901
165 1 0.00139
184 1 0.00116
194 1 0.00146
211 1 0.0013
252 1 0.00149
257 1 0.00157
481 1 0.00165
771 1 0.00168
923 1 0.00168
975 1 0.00168
1070 1 0.00167
1570 1 0.00168
1880 1 0.00169
2710 1 0.00169
3520 1 0.00169
3960 1 0.00169
4680 1 0.00169
4790 1 0.00169
4990 1 0.00169
5510 1 0.00169
5800 1 0.00169
6280 1 0.00169
7530 1 0.00169
7740 1 0.00169
8040 1 0.00169
8090 1 0.00169
8860 1 0.00169
9470 1 0.00169
9560 1 0.00169
10900 1 0.00169
11400 1 0.00169
14000 1 0.00169
14800 1 0.00169
14900 1 0.00169
15700 1 0.00169
17600 1 0.00169
17700 1 0.0017
18100 1 0.0017
18300 1 0.00169
19300 1 0.00169
19500 1 0.00169
20100 1 0.00169
20800 1 0.00169
24600 1 0.00169
25400 1 0.00169
27200 1 0.00169
27600 1 0.00169
32200 1 0.00169
32300 1 0.00169
33600 1 0.00169
36200 1 0.00169
36200 1 0.00169
36400 1 0.00169
36600 1 0.00169
37500 1 0.00169
38600 1 0.00169
45100 1 0.00169
45300 1 0.00169
53300 1 0.00169
54400 1 0.00169
54900 1 0.00169
59500 1 0.00169
62100 1 0.00169
64800 1 0.00169
65000 1 0.00169
65400 1 0.00169
69000 1 0.00169

CL41 ----> CL73

image

No. of shared pairs: :360

CL41 ----> CL37

image

No. of shared pairs: :121

CL41 ----> CL238

image

No. of shared pairs: :79

CL41 ----> CL185

image

No. of shared pairs: :61

CL41 ----> CL216

image

No. of shared pairs: :10