Cluster no. 40

Cluster no. 40

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Cluster is part of supercluster: 3

Cluster characteristics:

size	6644
size_real	6644
ecount	200983
supercluster	3
annotations_summary
pair_completeness	0.706214689265537
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.027844671884407
satellite_probability	2.79813550417282e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2160
S5	4
S4	5
S7	2110
S9	2310
S6	9
S2	30
S1	7
S3	7

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	20300.0	17.5	22.5	19900.0	22900	114.0	236	62.0	53.5
S5	17.5	0.0	0.0	10.0	13	0.0	0	0.0	0.0
S4	22.5	0.0	0.0	31.5	19	0.0	1	0.0	0.0
S7	19900.0	10.0	31.5	20100.0	23000	107.0	256	57.0	53.0
S9	22900.0	13.0	19.0	23000.0	25800	114.0	276	62.0	66.0
S6	114.0	0.0	0.0	107.0	114	0.0	1	0.0	0.5
S2	236.0	0.0	1.0	256.0	276	1.0	2	1.0	0.0
S1	62.0	0.0	0.0	57.0	62	0.0	1	0.0	0.5
S3	53.5	0.0	0.0	53.0	66	0.5	0	0.5	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.010	1.370	0.961	0.990	1.000	1.070	0.962	1.070	0.975
S5	1.370	0.000	0.000	0.781	0.892	0.000	0.000	0.000	0.000
S4	0.961	0.000	0.000	1.350	0.714	0.000	3.510	0.000	0.000
S7	0.990	0.781	1.350	1.000	1.010	1.000	1.050	0.988	0.966
S9	1.000	0.892	0.714	1.010	0.994	0.945	0.994	0.944	1.060
S6	1.070	0.000	0.000	1.000	0.945	0.000	0.771	0.000	1.720
S2	0.962	0.000	3.510	1.050	0.994	0.771	0.672	1.420	0.000
S1	1.070	0.000	0.000	0.988	0.944	0.000	1.420	0.000	3.170
S3	0.975	0.000	0.000	0.966	1.060	1.720	0.000	3.170	0.000

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

53	728
12	602
4	582
102	480
167	48
114	37
9	34
103	17
166	7
351	4
727	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

4	343	0.158
53	262	0.232
102	165	0.176
114	65	0.0707
351	47	0.0786
167	15	0.0192
727	13	0.0225
12	12	0.00681
103	9	0.0109
22	6	0.00273
166	6	0.00809
2180	6	0.0104
9	5	0.00394
6460	5	0.0087
11	4	0.00221
8430	4	0.00697
8	3	0.00126
54	3	0.00213
14200	3	0.00523
17	2	0.000914
32	2	0.00172
83	2	0.00211
1240	2	0.00347
1530	2	0.00346
8950	2	0.00348
11000	2	0.00348
12700	2	0.00349
24500	2	0.00349
28200	2	0.00349
44400	2	0.00349
49700	2	0.00349
58300	2	0.00349
61800	2	0.00349
63200	2	0.00349
65400	2	0.00349
15	1	0.000352
18	1	0.000547
23	1	0.000587
49	1	0.000473
65	1	0.00102
78	1	0.000602
91	1	0.000815
100	1	0.001
104	1	0.00132
106	1	0.00102
131	1	0.0011
162	1	0.000932
192	1	0.00134
490	1	0.00171
702	1	0.00172
1180	1	0.00173
4350	1	0.00174
7430	1	0.00174
13900	1	0.00174
26400	1	0.00175
29100	1	0.00175
38300	1	0.00175
47600	1	0.00175
55500	1	0.00175
62000	1	0.00175
69000	1	0.00175

CL40 ----> CL4

No. of shared pairs: :343

CL40 ----> CL53

No. of shared pairs: :262

CL40 ----> CL102

No. of shared pairs: :165

CL40 ----> CL114

No. of shared pairs: :65

CL40 ----> CL351

No. of shared pairs: :47

CL40 ----> CL167

No. of shared pairs: :15

CL40 ----> CL727

No. of shared pairs: :13

CL40 ----> CL12

No. of shared pairs: :12