Cluster no. 38

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Cluster is part of supercluster: 5

Cluster characteristics:

size 6652
size_real 6652
ecount 223120
supercluster 5
annotations_summary 0.02% organelle/mitochondria
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% Class_I/LINE:LINE-RT
pair_completeness 0.52779053743684
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00165363800360794
satellite_probability 1.86264069827155e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 6
S5 8
S4 6
S7 9
S9 8
S6 16
S2 2100
S1 2310
S3 2180
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0.0 0.0 0 0.0 19.0 15.0 15.0
S5 0 1.0 0.5 0.0 0 0.0 70.0 78.5 79.0
S4 0 0.5 0.0 0.5 1 0.0 84.0 83.5 75.5
S7 0 0.0 0.5 2.0 0 0.5 130.0 126.0 134.0
S9 0 0.0 1.0 0.0 1 0.0 159.0 140.0 147.0
S6 0 0.0 0.0 0.5 0 3.0 60.5 61.0 57.0
S2 19 70.0 84.0 130.0 159 60.5 24600.0 24600.0 24300.0
S1 15 78.5 83.5 126.0 140 61.0 24600.0 25100.0 24500.0
S3 15 79.0 75.5 134.0 147 57.0 24300.0 24500.0 23800.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.000 0.000 0.000 0.000 0.000 1.170 0.915 0.935
S5 0.000 4.250 1.990 0.000 0.000 0.000 0.923 1.030 1.050
S4 0.000 1.990 0.000 1.160 2.030 0.000 1.030 1.020 0.942
S7 0.000 0.000 1.160 2.880 0.000 1.560 0.993 0.961 1.040
S9 0.000 0.000 2.030 0.000 1.110 0.000 1.070 0.937 1.000
S6 0.000 0.000 0.000 1.560 0.000 20.200 1.000 1.000 0.957
S2 1.170 0.923 1.030 0.993 1.070 1.000 1.000 0.993 1.000
S1 0.915 1.030 1.020 0.961 0.937 1.000 0.993 1.000 1.000
S3 0.935 1.050 0.942 1.040 1.000 0.957 1.000 1.000 0.994

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.00015
LINE LINE-RT LINE LINE-RT 1 0.00015
Ale Ty1-RT Ale Ty1-RT 1 0.00015

clusters with similarity:

Cluster Number of similarity hits
57 1960
64 44
147 30
143 20
27 6
108 5
260 5
58 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
57 603 0.33
147 211 0.144
64 126 0.068
143 63 0.0436
108 22 0.0153
260 16 0.0144
23 9 0.00417
27 7 0.00369
42 7 0.00435
168 6 0.0045
1150 6 0.00581
85 5 0.00326
595 5 0.00479
1600 4 0.00387
2800 4 0.00388
6970 4 0.00388
9290 4 0.00388
110 3 0.0018
735 3 0.00289
2390 3 0.00291
3030 3 0.00291
3130 3 0.00291
4010 3 0.00291
4920 3 0.00291
6540 3 0.00291
17800 3 0.00291
19000 3 0.00291
7 2 0.000811
46 2 0.00103
77 2 0.00158
125 2 0.00132
129 2 0.00159
153 2 0.0014
210 2 0.00162
1160 2 0.00193
1340 2 0.00194
1980 2 0.00193
2160 2 0.00194
2190 2 0.00194
2190 2 0.00194
3400 2 0.00194
4880 2 0.00194
4920 2 0.00194
5470 2 0.00194
5640 2 0.00194
5750 2 0.00194
8670 2 0.00194
12500 2 0.00194
14600 2 0.00194
17100 2 0.00194
17200 2 0.00194
18600 2 0.00194
27800 2 0.00194
28800 2 0.00194
37200 2 0.00194
38800 2 0.00194
44200 2 0.00194
45400 2 0.00194
51600 2 0.00194
60800 2 0.00194
61200 2 0.00194
62800 2 0.00194
64000 2 0.00194
68400 2 0.00194
68900 2 0.00194
69700 2 0.00194
116 1 0.00073
124 1 8e-04
131 1 0.000731
137 1 0.00086
148 1 0.000714
175 1 0.000817
177 1 0.000875
182 1 0.000833
187 1 0.00094
196 1 0.000845
451 1 0.000955
721 1 0.000962
1820 1 0.000969
2120 1 0.00097
3200 1 0.000969
3670 1 0.000971
4170 1 0.000969
4210 1 0.000969
4560 1 0.00097
4880 1 0.00097
4900 1 0.00097
5240 1 0.000971
5990 1 0.000971
6500 1 0.00097
6650 1 0.00097
6900 1 0.000971
7150 1 0.00097
8320 1 0.000971
8370 1 0.000971
8370 1 0.000972
10000 1 0.000972
10200 1 0.000971
10400 1 0.000972
10400 1 0.000971
11400 1 0.000972
11500 1 0.000971
11500 1 0.000971
11800 1 0.000971
11900 1 0.000971
12300 1 0.000971
13100 1 0.000972
14000 1 0.000972
14700 1 0.000971
14700 1 0.000971
15300 1 0.000971
16600 1 0.000971
16700 1 0.000971
17000 1 0.000971
17600 1 0.000971
18700 1 0.000972
18800 1 0.000972
18800 1 0.000971
18900 1 0.000971
19500 1 0.000972
19800 1 0.000971
19900 1 0.000971
20000 1 0.000972
20400 1 0.000972
21100 1 0.000972
23500 1 0.000972
23600 1 0.000972
24100 1 0.000972
25400 1 0.000972
25800 1 0.000972
26100 1 0.000972
27300 1 0.000972
29300 1 0.000972
32400 1 0.000972
33200 1 0.000972
35300 1 0.000972
36400 1 0.000972
37200 1 0.000972
37600 1 0.000972
38300 1 0.000972
38400 1 0.000972
38500 1 0.000972
43400 1 0.000972
43800 1 0.000972
44200 1 0.000972
47900 1 0.000972
49400 1 0.000972
49500 1 0.000972
53500 1 0.000972
54600 1 0.000972
55200 1 0.000972
55300 1 0.000972
56300 1 0.000972
57100 1 0.000972
58000 1 0.000972
58100 1 0.000972
59100 1 0.000972
59600 1 0.000972
62400 1 0.000972
63000 1 0.000972
64600 1 0.000972
66300 1 0.000972
67200 1 0.000972
68600 1 0.000972

CL38 ----> CL57

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No. of shared pairs: :603

CL38 ----> CL147

image

No. of shared pairs: :211

CL38 ----> CL64

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No. of shared pairs: :126

CL38 ----> CL143

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No. of shared pairs: :63

CL38 ----> CL108

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No. of shared pairs: :22

CL38 ----> CL260

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No. of shared pairs: :16