Cluster no. 36

Cluster no. 36

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Cluster is part of supercluster: 7

Cluster characteristics:

size	6746
size_real	6746
ecount	147907
supercluster	7
annotations_summary	0.07% organelle/plastid 0.01% organelle/mitochondria
pair_completeness	0.563745943439963
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.114882893566558
satellite_probability	1.17020528303797e-15
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2250
S5	9
S4	8
S7	2240
S9	2210
S6	9
S2	10
S1	10
S3	4

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	16500.0	27.5	104	16600.0	15800.0	39.5	122.0	34.0	5.5
S5	27.5	1.0	0	28.5	22.5	0.0	0.5	0.0	0.0
S4	104.0	0.0	0	110.0	105.0	0.0	1.0	0.0	0.0
S7	16600.0	28.5	110	16800.0	16200.0	41.5	128.0	36.0	9.5
S9	15800.0	22.5	105	16200.0	15300.0	36.0	118.0	30.0	4.5
S6	39.5	0.0	0	41.5	36.0	0.0	0.0	0.5	0.0
S2	122.0	0.5	1	128.0	118.0	0.0	2.0	0.0	0.0
S1	34.0	0.0	0	36.0	30.0	0.5	0.0	1.0	0.0
S3	5.5	0.0	0	9.5	4.5	0.0	0.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.000	1.030	0.978	0.999	0.998	1.010	0.987	1.000	0.846
S5	1.030	23.100	0.000	1.050	0.873	0.000	2.490	0.000	0.000
S4	0.978	0.000	0.000	1.020	1.020	0.000	1.240	0.000	0.000
S7	0.999	1.050	1.020	0.994	1.010	1.050	1.020	1.050	1.440
S9	0.998	0.873	1.020	1.010	0.996	0.951	0.983	0.918	0.717
S6	1.010	0.000	0.000	1.050	0.951	0.000	0.000	6.200	0.000
S2	0.987	2.490	1.240	1.020	0.983	0.000	2.150	0.000	0.000
S1	1.000	0.000	0.000	1.050	0.918	6.200	0.000	14.400	0.000
S3	0.846	0.000	0.000	1.440	0.717	0.000	0.000	0.000	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.00015

plastid plastid 5 0.00074

clusters with similarity:

Cluster	Number of similarity hits

11	2520
22	441
68	164
69	144
54	135
140	17
53	3
206	3
5	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

11	590	0.27
68	357	0.206
22	163	0.0635
54	58	0.0326
206	32	0.0285
140	12	0.00867
4	9	0.00355
69	8	0.00388
8	7	0.00254
9	6	0.00366
2520	6	0.00635
17	5	0.00196
53	5	0.00334
91	5	0.00313
12	4	0.00188
59	4	0.00189
5	3	0.00107
1410	3	0.00316
1570	3	0.00316
5480	3	0.00318
11300	3	0.00318
51	2	0.000931
83	2	0.00152
100	2	0.00146
106	2	0.00149
253	2	0.002
725	2	0.0021
1730	2	0.00212
5330	2	0.00212
5450	2	0.00212
8570	2	0.00212
14000	2	0.00212
15400	2	0.00212
16200	2	0.00212
16700	2	0.00212
18200	2	0.00212
27900	2	0.00212
32900	2	0.00212
34300	2	0.00212
39600	2	0.00212
39900	2	0.00212
50400	2	0.00212
55300	2	0.00212
55300	2	0.00212
55800	2	0.00212
58000	2	0.00212
58700	2	0.00212
67500	2	0.00212
56	1	0.00064
77	1	0.000848
79	1	0.000867
102	1	0.000765
103	1	0.000838
160	1	0.00102
162	1	0.000694
172	1	0.000997
173	1	0.000872
198	1	0.00089
251	1	0.00097
406	1	0.00105
446	1	0.00104
907	1	0.00105
1180	1	0.00106
6110	1	0.00106
6460	1	0.00106
7190	1	0.00106
7660	1	0.00106
7870	1	0.00106
8830	1	0.00106
9020	1	0.00106
10400	1	0.00106
11500	1	0.00106
12200	1	0.00106
12300	1	0.00106
13100	1	0.00106
16200	1	0.00106
16300	1	0.00106
17400	1	0.00106
17500	1	0.00106
22900	1	0.00106
23100	1	0.00106
24300	1	0.00106
24500	1	0.00106
29500	1	0.00106
31100	1	0.00106
34200	1	0.00106
39200	1	0.00106
43800	1	0.00106
46900	1	0.00106
49300	1	0.00106
49600	1	0.00106
49700	1	0.00106
50600	1	0.00106
52000	1	0.00106
55300	1	0.00106
55600	1	0.00106
59000	1	0.00106
59700	1	0.00106
65300	1	0.00106
67900	1	0.00106
69000	1	0.00106

CL36 ----> CL11

No. of shared pairs: :590

CL36 ----> CL68

No. of shared pairs: :357

CL36 ----> CL22

No. of shared pairs: :163

CL36 ----> CL54

No. of shared pairs: :58

CL36 ----> CL206

No. of shared pairs: :32

CL36 ----> CL140

No. of shared pairs: :12