Cluster no. 33

Cluster no. 33

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Cluster is part of supercluster: 1

Cluster characteristics:

size	6941
size_real	6941
ecount	962616
supercluster	1
annotations_summary	0.01% organelle/plastid
pair_completeness	0.327404857525339
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00864428756663305
satellite_probability	1.17931272802845e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2
S5	2320
S4	2360
S7	0
S9	5
S6	2240
S2	6
S1	6
S3	6

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	118	128.0	0	0.0	110	0.5	0.0	1.0
S5	118.0	99400	109000.0	0	100.0	99300	326.0	456.0	308.0
S4	128.0	109000	120000.0	0	91.5	109000	348.0	503.0	362.0
S7	0.0	0	0.0	0	0.0	0	0.0	0.0	0.0
S9	0.0	100	91.5	0	0.0	94	1.0	0.5	0.5
S6	110.0	99300	109000.0	0	94.0	99200	324.0	454.0	324.0
S2	0.5	326	348.0	0	1.0	324	0.0	1.0	1.0
S1	0.0	456	503.0	0	0.5	454	1.0	2.0	1.5
S3	1.0	308	362.0	0	0.5	324	1.0	1.5	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	1.030	1.020	NA	0.000	0.956	1.350	0.000	2.710
S5	1.030	1.000	0.999	NA	1.090	1.000	1.010	1.000	0.962
S4	1.020	0.999	1.000	NA	0.899	1.000	0.983	1.000	1.030
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	0.000	1.090	0.899	NA	0.000	1.020	3.340	1.180	1.670
S6	0.956	1.000	1.000	NA	1.020	0.999	1.010	0.998	1.010
S2	1.350	1.010	0.983	NA	3.340	1.010	0.000	0.679	0.964
S1	0.000	1.000	1.000	NA	1.180	0.998	0.679	0.957	1.020
S3	2.710	0.962	1.030	NA	1.670	1.010	0.964	1.020	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00014

clusters with similarity:

Cluster	Number of similarity hits

2	26800
48	10900
3	2240
15	1240
6	310
39	303
19	141
66	3
20	2
67	1
1310	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

2	1230	0.371
48	781	0.286
3	637	0.139
19	301	0.0868
6	136	0.0309
15	41	0.0102
39	25	0.0092
67	11	0.00421
29	10	0.00358
66	7	0.00275
1310	7	0.00396
14	5	0.00149
34	5	0.0017
56	4	0.00168
1560	4	0.00227
24	2	0.000842
26	2	0.000745
37	2	8e-04
45	2	0.000627
61	2	0.00077
84	2	0.000799
87	2	0.00084
9050	2	0.00114
9100	2	0.00114
18600	2	0.00114
1	1	0.000288
13	1	0.000305
16	1	0.00044
25	1	0.000398
41	1	0.000426
43	1	0.000332
44	1	0.000383
60	1	0.000365
62	1	0.000459
73	1	0.000425
80	1	4e-04
82	1	0.000418
89	1	0.000448
90	1	0.000412
111	1	0.000515
123	1	0.000429
128	1	0.00042
135	1	0.000505
138	1	0.00051
141	1	0.000517
145	1	0.00053
146	1	0.000439
241	1	0.000546
252	1	0.000544
254	1	0.000552
758	1	0.000567
2500	1	0.000568
4100	1	0.000568
6060	1	0.000568
6970	1	0.000568
8240	1	0.000568
13100	1	0.000568
15800	1	0.000568
16700	1	0.000569
29200	1	0.000568
30500	1	0.000568
31700	1	0.000568
36200	1	0.000568
38700	1	0.000568
42000	1	0.000568
48800	1	0.000568
55500	1	0.000568
59600	1	0.000568
61600	1	0.000568
66200	1	0.000568
66600	1	0.000568

CL33 ----> CL2

No. of shared pairs: :1226

CL33 ----> CL48

No. of shared pairs: :781

CL33 ----> CL3

No. of shared pairs: :637

CL33 ----> CL19

No. of shared pairs: :301

CL33 ----> CL6

No. of shared pairs: :136

CL33 ----> CL15

No. of shared pairs: :41

CL33 ----> CL39

No. of shared pairs: :25

CL33 ----> CL67

No. of shared pairs: :11

CL33 ----> CL29

No. of shared pairs: :10