Cluster no. 27

Cluster no. 27

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Cluster is part of supercluster: 5

Cluster characteristics:

size	7168
size_real	7168
ecount	544146
supercluster	5
annotations_summary	0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
pair_completeness	0.608978675645342
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.001953125
satellite_probability	6.64175142550315e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2
S5	16
S4	17
S7	1
S9	9
S6	8
S2	2240
S1	2380
S3	2500

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	0.5	1	0.0	0	0.5	44	49.5	52.5
S5	0.5	1.0	2	0.0	3	1.5	348	385.0	414.0
S4	1.0	2.0	1	0.0	3	3.0	345	374.0	370.0
S7	0.0	0.0	0	0.0	0	0.0	5	3.0	7.5
S9	0.0	3.0	3	0.0	0	3.0	280	322.0	326.0
S6	0.5	1.5	3	0.0	3	4.0	352	408.0	382.0
S2	44.0	348.0	345	5.0	280	352.0	50700	56800.0	57600.0
S1	49.5	385.0	374	3.0	322	408.0	56800	62900.0	63800.0
S3	52.5	414.0	370	7.5	326	382.0	57600	63800.0	65400.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	1.590	3.350	0.000	0.000	1.590	0.973	0.984	1.030
S5	1.590	0.408	0.858	0.000	1.510	0.613	0.987	0.980	1.040
S4	3.350	0.858	0.451	0.000	1.590	1.290	1.030	1.000	0.972
S7	0.000	0.000	0.000	0.000	0.000	0.000	1.060	0.569	1.400
S9	0.000	1.510	1.590	0.000	0.000	1.510	0.976	1.010	1.000
S6	1.590	0.613	1.290	0.000	1.510	1.640	0.997	1.040	0.957
S2	0.973	0.987	1.030	1.060	0.976	0.997	0.996	1.000	1.000
S1	0.984	0.980	1.000	0.569	1.010	1.040	1.000	1.000	0.997
S3	1.030	1.040	0.972	1.400	1.000	0.957	1.000	0.997	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TatV Ty3-PROT TatV Ty3-PROT 1 0.00014

clusters with similarity:

Cluster	Number of similarity hits

5	8680
46	4790
58	2420
153	174
260	11
38	6
174	5
248	4
110	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

46	671	0.377
58	370	0.256
153	233	0.183
260	30	0.0315
23	10	0.005
38	7	0.00369
1040	6	0.00681
57	5	0.00299
42	4	0.00275
110	4	0.00266
5	3	0.0011
7	3	0.0013
85	3	0.00218
129	3	0.00272
64	2	0.00118
96	2	0.00141
143	2	0.00155
148	2	0.00161
168	2	0.0017
210	2	0.00185
6910	2	0.00229
9730	2	0.00229
9840	2	0.00229
17700	2	0.00229
24000	2	0.00229
31500	2	0.00229
21	1	0.000742
73	1	0.000682
77	1	0.000901
124	1	0.000915
125	1	0.000737
127	1	0.000987
175	1	0.000937
189	1	0.000999
229	1	0.001
275	1	0.00107
340	1	0.00111
555	1	0.00114
670	1	0.00113
908	1	0.00113
1840	1	0.00114
2290	1	0.00114
4800	1	0.00114
5370	1	0.00114
5920	1	0.00115
6640	1	0.00115
19400	1	0.00115
21600	1	0.00115
22300	1	0.00115
27100	1	0.00115
29200	1	0.00115
38800	1	0.00115
39400	1	0.00115
43000	1	0.00115
44400	1	0.00115
45300	1	0.00115
47300	1	0.00115
49100	1	0.00115
52800	1	0.00115
53500	1	0.00115
53500	1	0.00115
57200	1	0.00115
60900	1	0.00115
65500	1	0.00115

CL27 ----> CL46

No. of shared pairs: :671

CL27 ----> CL58

No. of shared pairs: :370

CL27 ----> CL153

No. of shared pairs: :233

CL27 ----> CL260

No. of shared pairs: :30

CL27 ----> CL23

No. of shared pairs: :10