Cluster no. 25

Cluster no. 25

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Cluster is part of supercluster: 11

Cluster characteristics:

size	7218
size_real	7218
ecount	282679
supercluster	11
annotations_summary	0.10% organelle/plastid 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
pair_completeness	0.654366261746505
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.264616237184816
satellite_probability	5.22323430117899e-11
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1
S5	2410
S4	2330
S7	6
S9	2
S6	2460
S2	4
S1	2
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	45.0	31.0	0	0.0	32.5	0.0	0.0	0.0
S5	45.0	33600.0	30700.0	126	97.5	32600.0	89.5	52.5	15.0
S4	31.0	30700.0	28400.0	102	87.5	29900.0	80.0	57.5	15.5
S7	0.0	126.0	102.0	1	1.0	118.0	1.0	0.0	0.0
S9	0.0	97.5	87.5	1	1.0	99.0	2.0	0.0	0.0
S6	32.5	32600.0	29900.0	118	99.0	32000.0	93.0	65.5	24.0
S2	0.0	89.5	80.0	1	2.0	93.0	1.0	0.0	0.0
S1	0.0	52.5	57.5	0	0.0	65.5	0.0	0.0	0.0
S3	0.0	15.0	15.5	0	0.0	24.0	0.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	1.210	0.904	0.000	0.000	0.893	0.000	0.00	0.00
S5	1.210	1.000	0.998	1.050	0.984	0.999	0.976	0.87	0.80
S4	0.904	0.998	1.010	0.923	0.961	0.996	0.950	1.04	0.90
S7	0.000	1.050	0.923	2.330	2.820	1.010	3.050	0.00	0.00
S9	0.000	0.984	0.961	2.820	3.410	1.020	7.370	0.00	0.00
S6	0.893	0.999	0.996	1.010	1.020	1.000	1.040	1.11	1.31
S2	0.000	0.976	0.950	3.050	7.370	1.040	3.980	0.00	0.00
S1	0.000	0.870	1.040	0.000	0.000	1.110	0.000	0.00	0.00
S3	0.000	0.800	0.900	0.000	0.000	1.310	0.000	0.00	0.00

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 7 0.00097

TatIII Ty3-INT TatIII Ty3-INT 1 0.00014

clusters with similarity:

Cluster	Number of similarity hits

66	2280
237	267
109	59
184	15
45	11
303	10
20	2
39	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

66	470	0.304
237	77	0.093
184	52	0.0507
109	47	0.0387
303	29	0.037
55	18	0.0122
82	9	0.0065
3	7	0.00196
1360	6	0.00789
14	5	0.00212
29	5	0.00279
843	5	0.00655
1030	5	0.00656
4120	5	0.0066
2	4	0.00174
39	4	0.00234
48	4	0.00231
56	4	0.00291
1170	4	0.00525
1990	4	0.00527
2550	4	0.00528
6	3	0.000883
67	3	0.00186
1540	3	0.00395
8150	3	0.00397
16800	3	0.00397
20	2	0.0012
37	2	0.00134
43	2	0.000994
99	2	0.00157
149	2	0.00229
9690	2	0.00265
11900	2	0.00265
14400	2	0.00265
17500	2	0.00265
22600	2	0.00265
28200	2	0.00265
36900	2	0.00265
38500	2	0.00265
41000	2	0.00265
42500	2	0.00265
43700	2	0.00265
53500	2	0.00265
54200	2	0.00265
55600	2	0.00265
57600	2	0.00265
64600	2	0.00265
66400	2	0.00265
1	1	0.000404
10	1	0.000428
13	1	0.000439
15	1	0.00033
19	1	0.000406
24	1	0.000729
28	1	0.000559
33	1	0.000398
34	1	0.000518
41	1	0.000745
45	1	0.000458
47	1	0.000587
49	1	0.000436
84	1	0.000667
87	1	0.000727
90	1	0.000702
119	1	0.000957
121	1	0.000979
141	1	0.00107
161	1	0.000887
165	1	0.00113
178	1	0.00106
211	1	0.00107
215	1	0.00129
285	1	0.00128
350	1	0.0013
596	1	0.0013
3570	1	0.00132
3950	1	0.00132
5170	1	0.00132
5460	1	0.00132
5650	1	0.00132
6660	1	0.00132
7830	1	0.00132
7940	1	0.00132
8010	1	0.00132
8010	1	0.00132
11200	1	0.00133
11400	1	0.00132
12100	1	0.00132
12200	1	0.00132
13100	1	0.00132
13700	1	0.00132
18600	1	0.00133
18600	1	0.00132
25500	1	0.00132
25500	1	0.00132
27000	1	0.00132
28700	1	0.00132
30300	1	0.00132
30500	1	0.00132
31800	1	0.00132
37000	1	0.00132
37900	1	0.00132
39200	1	0.00132
40000	1	0.00132
41100	1	0.00132
42500	1	0.00132
44800	1	0.00132
46800	1	0.00132
57200	1	0.00132
57500	1	0.00132
57700	1	0.00132
57800	1	0.00132
59800	1	0.00132
60100	1	0.00132
62300	1	0.00132
65200	1	0.00132
66300	1	0.00132
67100	1	0.00132
67300	1	0.00132
68200	1	0.00132
69700	1	0.00132

CL25 ----> CL66

No. of shared pairs: :470

CL25 ----> CL237

No. of shared pairs: :77

CL25 ----> CL184

No. of shared pairs: :52

CL25 ----> CL109

No. of shared pairs: :47

CL25 ----> CL303

No. of shared pairs: :29

CL25 ----> CL55

No. of shared pairs: :18