Cluster no. 24

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Cluster is part of supercluster: 10

Cluster characteristics:

size 7354
size_real 7354
ecount 558750
supercluster 10
annotations_summary
pair_completeness 0.712223515715949
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00108784335055752
satellite_probability 1.39099901770407e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 11
S5 2390
S4 2480
S7 8
S9 6
S6 2460
S2 5
S1 0
S3 2
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 266 280 1.5 1.0 270 1 0 1
S5 266.0 58000 60800 224.0 197.0 60000 132 0 153
S4 280.0 60800 63900 230.0 207.0 63200 148 0 162
S7 1.5 224 230 0.0 0.5 221 1 0 1
S9 1.0 197 207 0.5 2.0 170 0 0 0
S6 270.0 60000 63200 221.0 170.0 62900 152 0 142
S2 1.0 132 148 1.0 0.0 152 0 0 1
S1 0.0 0 0 0.0 0.0 0 0 0 0
S3 1.0 153 162 1.0 0.0 142 1 0 1
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 1.010 1.010 1.500 1.180 0.982 1.570 NA 1.470
S5 1.010 1.000 1.000 1.020 1.060 0.997 0.945 NA 1.030
S4 1.010 1.000 1.000 1.000 1.060 0.999 1.010 NA 1.040
S7 1.500 1.020 1.000 0.000 0.712 0.972 1.900 NA 1.780
S9 1.180 1.060 1.060 0.712 3.350 0.879 0.000 NA 0.000
S6 0.982 0.997 0.999 0.972 0.879 1.000 1.040 NA 0.919
S2 1.570 0.945 1.010 1.900 0.000 1.040 0.000 NA 2.790
S1 NA NA NA NA NA NA NA NA NA
S3 1.470 1.030 1.040 1.780 0.000 0.919 2.790 NA 2.620

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
95 2460
112 48
60 23

clusters connected through mates:

Cluster Number of shared
read pairs		 k
95 382 0.328
112 162 0.17
62 13 0.0125
60 6 0.00375
3130 6 0.00965
793 5 0.00793
3270 5 0.00804
13 4 0.00187
4700 4 0.00644
3 3 0.000872
34 3 0.00167
56 3 0.00242
5140 3 0.00483
7170 3 0.00483
9990 3 0.00484
9990 3 0.00484
13500 3 0.00484
19 2 0.000859
33 2 0.000842
67 2 0.00136
73 2 0.00165
84 2 0.00147
86 2 0.00179
88 2 0.00157
90 2 0.00155
701 2 0.0032
2890 2 0.00323
3540 2 0.00322
3910 2 0.00322
8300 2 0.00323
14100 2 0.00323
14300 2 0.00323
14400 2 0.00323
21800 2 0.00323
22300 2 0.00323
29200 2 0.00323
32100 2 0.00323
33500 2 0.00323
35600 2 0.00323
43400 2 0.00323
50400 2 0.00323
2 1 0.000462
6 1 0.000307
14 1 0.00045
15 1 0.000346
21 1 0.000913
25 1 0.000729
29 1 0.000604
31 1 0.000731
35 1 0.000627
37 1 0.000735
39 1 0.000634
43 1 0.000533
45 1 0.000488
52 1 0.000855
55 1 0.000749
70 1 0.00106
72 1 0.000783
76 1 0.000862
80 1 0.000736
81 1 0.00101
82 1 8e-04
100 1 0.000956
102 1 0.00102
117 1 0.00101
121 1 0.00113
123 1 0.00084
135 1 0.00119
141 1 0.00126
146 1 0.000878
237 1 0.00145
252 1 0.00143
369 1 0.00152
445 1 0.00157
698 1 0.00159
1030 1 0.00159
1210 1 0.0016
2310 1 0.00161
2550 1 0.00161
3150 1 0.00161
4610 1 0.00161
5760 1 0.00161
7710 1 0.00161
7990 1 0.00161
8390 1 0.00161
9130 1 0.00161
9300 1 0.00162
10400 1 0.00161
11100 1 0.00161
15700 1 0.00161
17600 1 0.00161
17800 1 0.00162
18500 1 0.00161
19600 1 0.00161
22300 1 0.00162
22600 1 0.00162
25600 1 0.00162
26200 1 0.00162
26500 1 0.00162
28300 1 0.00162
28600 1 0.00162
31000 1 0.00162
31500 1 0.00162
32000 1 0.00162
32200 1 0.00162
32500 1 0.00162
33600 1 0.00162
33600 1 0.00162
34400 1 0.00162
35400 1 0.00162
37700 1 0.00162
38900 1 0.00162
39200 1 0.00162
41200 1 0.00162
43700 1 0.00162
47200 1 0.00162
49700 1 0.00162
53300 1 0.00162
54200 1 0.00162
54400 1 0.00162
56900 1 0.00162
57700 1 0.00162
62700 1 0.00162
63100 1 0.00162
63500 1 0.00162
65300 1 0.00162
66000 1 0.00162
66100 1 0.00162
68200 1 0.00162
70000 1 0.00162
70300 1 0.00162

CL24 ----> CL95

image

No. of shared pairs: :382

CL24 ----> CL112

image

No. of shared pairs: :162

CL24 ----> CL62

image

No. of shared pairs: :13