| size | 7419 |
| size_real | 7419 |
| ecount | 721097 |
| supercluster | 2 |
| annotations_summary | 0.03% organelle/plastid 0.01% organelle/mitochondria 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-CHDII 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT |
| pair_completeness | 0.390106801573918 |
| pbs_score | None |
| TR_score | None |
| TR_monomer_length | None |
| loop_index | 0.00431324976411915 |
| satellite_probability | 7.03651426040455e-21 |
| consensus | None |
| TAREAN_annotation | Other |
| orientation_score | 1 |
| Species | Read count |
|---|---|
| S8 | 2460 |
| S5 | 9 |
| S4 | 11 |
| S7 | 2420 |
| S9 | 2490 |
| S6 | 11 |
| S2 | 14 |
| S1 | 11 |
| S3 | 1 |
| S8 | S5 | S4 | S7 | S9 | S6 | S2 | S1 | S3 | |
|---|---|---|---|---|---|---|---|---|---|
| S8 | 77100 | 305.0 | 193.0 | 78900.0 | 78300.0 | 398 | 522.0 | 352.0 | 45.0 |
| S5 | 305 | 2.0 | 0.5 | 300.0 | 311.0 | 3 | 0.5 | 2.5 | 0.0 |
| S4 | 193 | 0.5 | 3.0 | 195.0 | 215.0 | 3 | 0.5 | 1.5 | 0.5 |
| S7 | 78900 | 300.0 | 195.0 | 80000.0 | 79400.0 | 380 | 536.0 | 347.0 | 35.5 |
| S9 | 78300 | 311.0 | 215.0 | 79400.0 | 79700.0 | 436 | 538.0 | 376.0 | 43.5 |
| S6 | 398 | 3.0 | 3.0 | 380.0 | 436.0 | 2 | 4.0 | 2.0 | 0.0 |
| S2 | 522 | 0.5 | 0.5 | 536.0 | 538.0 | 4 | 2.0 | 2.5 | 0.0 |
| S1 | 352 | 2.5 | 1.5 | 347.0 | 376.0 | 2 | 2.5 | 1.0 | 0.0 |
| S3 | 45 | 0.0 | 0.5 | 35.5 | 43.5 | 0 | 0.0 | 0.0 | 0.0 |
| S8 | S5 | S4 | S7 | S9 | S6 | S2 | S1 | S3 | |
|---|---|---|---|---|---|---|---|---|---|
| S8 | 0.998 | 1.010 | 0.963 | 1.000 | 0.999 | 0.989 | 0.993 | 0.991 | 1.100 |
| S5 | 1.010 | 1.690 | 0.637 | 0.975 | 1.010 | 1.900 | 0.243 | 1.800 | 0.000 |
| S4 | 0.963 | 0.637 | 5.780 | 0.957 | 1.060 | 2.880 | 0.367 | 1.630 | 4.730 |
| S7 | 1.000 | 0.975 | 0.957 | 1.000 | 0.996 | 0.930 | 1.000 | 0.962 | 0.856 |
| S9 | 0.999 | 1.010 | 1.060 | 0.996 | 1.000 | 1.070 | 1.010 | 1.040 | 1.050 |
| S6 | 0.989 | 1.900 | 2.880 | 0.930 | 1.070 | 0.955 | 1.460 | 1.080 | 0.000 |
| S2 | 0.993 | 0.243 | 0.367 | 1.000 | 1.010 | 1.460 | 0.559 | 1.040 | 0.000 |
| S1 | 0.991 | 1.800 | 1.630 | 0.962 | 1.040 | 1.080 | 1.040 | 0.614 | 0.000 |
| S3 | 1.100 | 0.000 | 4.730 | 0.856 | 1.050 | 0.000 | 0.000 | 0.000 | 0.000 |
protein domains:
|
|
||||||||||||||||||||||||||||
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
CL22 ----> CL17
No. of shared pairs: :1195
CL22 ----> CL162
No. of shared pairs: :412
CL22 ----> CL36
No. of shared pairs: :163
CL22 ----> CL139
No. of shared pairs: :105
CL22 ----> CL8
No. of shared pairs: :60
CL22 ----> CL91
No. of shared pairs: :49
CL22 ----> CL173
No. of shared pairs: :48
CL22 ----> CL107
No. of shared pairs: :47
CL22 ----> CL65
No. of shared pairs: :42
CL22 ----> CL198
No. of shared pairs: :42
CL22 ----> CL11
No. of shared pairs: :32
CL22 ----> CL5
No. of shared pairs: :29
CL22 ----> CL54
No. of shared pairs: :22
CL22 ----> CL18
No. of shared pairs: :14
CL22 ----> CL68
No. of shared pairs: :13
CL22 ----> CL4
No. of shared pairs: :12
CL22 ----> CL12
No. of shared pairs: :12
CL22 ----> CL140
No. of shared pairs: :12
CL22 ----> CL51
No. of shared pairs: :10