Cluster no. 21

Cluster no. 21

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Cluster is part of supercluster: 13

Cluster characteristics:

size	7825
size_real	7825
ecount	198543
supercluster	13
annotations_summary	24.17% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 13.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 11.86% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 5.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 3.59% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT 3.55% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.47% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.36% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT 0.29% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT 0.06% Class_I/pararetrovirus:PARA-RT 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-RT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RH
pair_completeness	0.78246013667426
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000383386581469649
satellite_probability	3.89552186042479e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2080
S5	13
S4	11
S7	2050
S9	2050
S6	18
S2	506
S1	547
S3	541

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	16900.0	98	51.5	17100	17400.0	116.0	248.0	264.0	193
S5	98.0	0	0.0	122	124.0	1.0	1.0	1.0	0
S4	51.5	0	1.0	60	65.5	0.0	10.5	23.5	17
S7	17100.0	122	60.0	17400	18000.0	122.0	248.0	290.0	211
S9	17400.0	124	65.5	18000	18500.0	118.0	233.0	217.0	167
S6	116.0	1	0.0	122	118.0	1.0	37.0	37.5	36
S2	248.0	1	10.5	248	233.0	37.0	3500.0	3710.0	3800
S1	264.0	1	23.5	290	217.0	37.5	3710.0	4000.0	3920
S3	193.0	0	17.0	211	167.0	36.0	3800.0	3920.0	4180

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.2200	1.0700	0.853	1.2100	1.2000	0.938	0.0799	0.0805	0.0585
S5	1.0700	0.0000	0.000	1.3000	1.2900	1.230	0.0487	0.0460	0.0000
S4	0.8530	0.0000	3.790	0.9710	1.0400	0.000	0.7720	1.6300	1.1800
S7	1.2100	1.3000	0.971	1.2100	1.2200	0.964	0.0781	0.0860	0.0625
S9	1.2000	1.2900	1.040	1.2200	1.2200	0.911	0.0716	0.0630	0.0483
S6	0.9380	1.2300	0.000	0.9640	0.9110	0.910	1.3300	1.2800	1.2200
S2	0.0799	0.0487	0.772	0.0781	0.0716	1.330	5.0000	5.0100	5.1100
S1	0.0805	0.0460	1.630	0.0860	0.0630	1.280	5.0100	5.1100	4.9900
S3	0.0585	0.0000	1.180	0.0625	0.0483	1.220	5.1100	4.9900	5.2900

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

pararetrovirus PARA-RT pararetrovirus PARA-RT 5 0.00064

Tekay Ty3-CHDII Tekay Ty3-CHDII 278 0.03553

CRM Ty3-GAG CRM Ty3-GAG 23 0.00294

Tekay Ty3-GAG Tekay Ty3-GAG 403 0.05150

Tekay Ty3-INT Tekay Ty3-INT 1891 0.24166

Reina Ty3-PROT Reina Ty3-PROT 11 0.00141

Tekay Ty3-PROT Tekay Ty3-PROT 281 0.03591

Athila Ty3-RH Athila Ty3-RH 2 0.00026

CRM Ty3-RH CRM Ty3-RH 4 0.00051

Reina Ty3-RH Reina Ty3-RH 4 0.00051

TatIII Ty3-RH TatIII Ty3-RH 1 0.00013

Tekay Ty3-RH Tekay Ty3-RH 928 0.11859

CRM Ty3-RT CRM Ty3-RT 4 0.00051

Chlamyvir Ty3-RT Chlamyvir Ty3-RT 28 0.00358

Reina Ty3-RT Reina Ty3-RT 37 0.00473

Selgy Ty3-RT Selgy Ty3-RT 2 0.00026

Tcn1 Ty3-RT Tcn1 Ty3-RT 2 0.00026

Tekay Ty3-RT Tekay Ty3-RT 1023 0.13073

clusters with similarity:

Cluster	Number of similarity hits

106	264
83	244
4	57
124	33
32	8
316	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

83	138	0.162
106	129	0.146
124	42	0.06
246	16	0.0281
32	15	0.014
316	10	0.0199
54	9	0.00685
4	7	0.00337
12	7	0.0042
9	5	0.00426
22	5	0.00238
53	5	0.00484
6170	5	0.0104
8	4	0.00174
11	4	0.00233
17	3	0.00143
50	3	0.00437
12000	3	0.00626
13000	3	0.00626
75	2	0.00185
108	2	0.00225
148	2	0.00235
244	2	0.00398
2600	2	0.00415
9160	2	0.00417
23200	2	0.00418
61000	2	0.00418
66400	2	0.00418
66400	2	0.00418
5	1	0.000428
23	1	0.000622
24	1	0.000913
26	1	0.000713
27	1	0.000742
30	1	0.000673
57	1	0.000783
78	1	0.000638
85	1	0.00102
91	1	0.000883
139	1	0.00135
140	1	0.00109
147	1	0.00109
150	1	0.00161
183	1	0.00178
203	1	0.00156
209	1	0.00166
253	1	0.00186
270	1	0.00185
277	1	0.00196
320	1	0.00192
379	1	0.00198
492	1	0.00203
656	1	0.00207
1180	1	0.00207
2920	1	0.00208
5520	1	0.00208
6300	1	0.00209
6500	1	0.00208
7110	1	0.00209
7800	1	0.00209
7860	1	0.00209
8960	1	0.00209
16800	1	0.00209
19000	1	0.00209
21400	1	0.00209
21500	1	0.00209
23200	1	0.00209
23900	1	0.00209
24500	1	0.00209
26700	1	0.00209
30100	1	0.00209
33200	1	0.00209
34700	1	0.00209
35500	1	0.00209
43100	1	0.00209
49800	1	0.00209
53800	1	0.00209
54500	1	0.00209
54500	1	0.00209
56000	1	0.00209
56500	1	0.00209
58900	1	0.00209
62500	1	0.00209
63900	1	0.00209

CL21 ----> CL83

No. of shared pairs: :138

CL21 ----> CL106

No. of shared pairs: :129

CL21 ----> CL124

No. of shared pairs: :42

CL21 ----> CL246

No. of shared pairs: :16

CL21 ----> CL32

No. of shared pairs: :15

CL21 ----> CL316

No. of shared pairs: :10