Cluster no. 20

Cluster no. 20

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Cluster is part of supercluster: 1

Cluster characteristics:

size	8371
size_real	8371
ecount	632486
supercluster	1
annotations_summary
pair_completeness	0.642338630567
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.128300083622028
satellite_probability	1.34657966614552e-15
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3
S5	2740
S4	2770
S7	9
S9	5
S6	2820
S2	7
S1	5
S3	6

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	11.5	18	0.0	0.0	14.5	0.0	0.0	0.0
S5	11.5	65400.0	68600	198.0	108.0	68200.0	234.0	188.0	164.0
S4	18.0	68600.0	72800	206.0	87.0	72200.0	264.0	209.0	150.0
S7	0.0	198.0	206	0.0	0.5	210.0	0.5	1.0	0.5
S9	0.0	108.0	87	0.5	0.0	90.0	0.0	0.0	2.0
S6	14.5	68200.0	72200	210.0	90.0	70900.0	273.0	196.0	142.0
S2	0.0	234.0	264	0.5	0.0	273.0	0.0	0.5	0.0
S1	0.0	188.0	209	1.0	0.0	196.0	0.5	1.0	0.0
S3	0.0	164.0	150	0.5	2.0	142.0	0.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.814	1.210	0.000	0.000	0.983	0.000	0.000	0.000
S5	0.814	1.000	0.996	0.999	1.170	1.000	0.944	0.983	1.120
S4	1.210	0.996	1.000	0.986	0.891	1.000	1.010	1.030	0.966
S7	0.000	0.999	0.986	0.000	1.780	1.020	0.663	1.720	1.120
S9	0.000	1.170	0.891	1.780	0.000	0.932	0.000	0.000	9.590
S6	0.983	1.000	1.000	1.020	0.932	0.996	1.050	0.981	0.921
S2	0.000	0.944	1.010	0.663	0.000	1.050	0.000	0.688	0.000
S1	0.000	0.983	1.030	1.720	0.000	0.981	0.688	1.780	0.000
S3	0.000	1.120	0.966	1.120	9.590	0.921	0.000	0.000	0.000

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

10	11400
49	6290
19	2780
15	1510
109	599
45	500
378	20
2	19
25	2
33	2
66	2
796	2
6	1
14	1
80	1
95	1
211	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

49	520	0.212
15	481	0.151
19	169	0.0645
10	100	0.0401
109	73	0.0531
45	50	0.0213
6	26	0.00732
82	24	0.0156
796	21	0.0227
378	18	0.0192
72	14	0.00892
80	14	0.00848
3	9	0.00241
67	9	0.00509
48	8	0.00424
14	7	0.00278
184	4	0.00338
2100	4	0.00436
37	3	0.00181
47	3	0.00161
84	3	0.00181
5310	3	0.00328
6390	3	0.00328
1	2	0.00076
25	2	0.0012
55	2	0.00123
88	2	0.00128
95	2	0.00137
13400	2	0.00219
14500	2	0.00219
47600	2	0.00219
2	1	0.000407
5	1	0.000361
13	1	0.000411
16	1	0.000702
28	1	0.000514
29	1	0.000513
34	1	0.000479
39	1	0.000535
43	1	0.000461
44	1	0.000566
52	1	0.000684
60	1	0.000528
61	1	0.000572
66	1	0.000587
71	1	0.000543
81	1	0.000781
119	1	0.000832
128	1	0.000653
130	1	0.000759
135	1	0.000882
142	1	0.000909
145	1	0.000962
161	1	0.000779
186	1	0.000983
190	1	0.00102
252	1	0.00101
255	1	0.00105
499	1	0.00108
572	1	0.00108
1720	1	0.00109
2490	1	0.00109
3390	1	0.00109
5400	1	0.00109
6840	1	0.00109
7480	1	0.00109
11000	1	0.0011
11000	1	0.0011
14700	1	0.0011
15700	1	0.0011
18200	1	0.0011
18400	1	0.0011
18700	1	0.0011
26000	1	0.0011
36500	1	0.0011
37700	1	0.0011
40500	1	0.0011
40900	1	0.0011
48400	1	0.0011
48900	1	0.0011
64200	1	0.0011

CL20 ----> CL49

No. of shared pairs: :520

CL20 ----> CL15

No. of shared pairs: :481

CL20 ----> CL19

No. of shared pairs: :169

CL20 ----> CL10

No. of shared pairs: :100

CL20 ----> CL109

No. of shared pairs: :73

CL20 ----> CL45

No. of shared pairs: :50

CL20 ----> CL6

No. of shared pairs: :26

CL20 ----> CL82

No. of shared pairs: :24

CL20 ----> CL796

No. of shared pairs: :21

CL20 ----> CL378

No. of shared pairs: :18

CL20 ----> CL72

No. of shared pairs: :14

CL20 ----> CL80

No. of shared pairs: :14