Cluster no. 19
Go back to cluster table
Cluster is part of supercluster: 1
Cluster characteristics:
| size |
8510 |
| size_real |
8510 |
| ecount |
219618 |
| supercluster |
1 |
| annotations_summary |
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RH
0.02% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
|
| pair_completeness |
0.426894701542589 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.000940070505287897 |
| satellite_probability |
5.12148319141113e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
10 |
| S5 |
2850 |
| S4 |
2880 |
| S7 |
11 |
| S9 |
3 |
| S6 |
2740 |
| S2 |
9 |
| S1 |
1 |
| S3 |
2 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
5.0 |
213.0 |
167.0 |
0.0 |
0.0 |
189.0 |
0.5 |
0.5 |
0.0 |
| S5 |
213.0 |
25400.0 |
24300.0 |
82.5 |
16.5 |
24300.0 |
89.0 |
29.5 |
0.5 |
| S4 |
167.0 |
24300.0 |
24200.0 |
85.5 |
17.5 |
23500.0 |
79.0 |
22.0 |
2.0 |
| S7 |
0.0 |
82.5 |
85.5 |
3.0 |
0.0 |
92.5 |
1.0 |
0.0 |
0.0 |
| S9 |
0.0 |
16.5 |
17.5 |
0.0 |
0.0 |
18.5 |
0.0 |
0.0 |
0.0 |
| S6 |
189.0 |
24300.0 |
23500.0 |
92.5 |
18.5 |
23300.0 |
87.5 |
21.5 |
0.0 |
| S2 |
0.5 |
89.0 |
79.0 |
1.0 |
0.0 |
87.5 |
1.0 |
0.0 |
0.0 |
| S1 |
0.5 |
29.5 |
22.0 |
0.0 |
0.0 |
21.5 |
0.0 |
0.0 |
0.0 |
| S3 |
0.0 |
0.5 |
2.0 |
0.0 |
0.0 |
0.0 |
0.0 |
0.0 |
0.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
3.320 |
1.090 |
0.881 |
0.00 |
0.000 |
1.010 |
0.740 |
2.600 |
0.00 |
| S5 |
1.090 |
1.000 |
0.991 |
0.92 |
0.927 |
1.000 |
1.020 |
1.180 |
0.59 |
| S4 |
0.881 |
0.991 |
1.010 |
0.98 |
1.010 |
0.996 |
0.929 |
0.908 |
2.43 |
| S7 |
0.000 |
0.920 |
0.980 |
9.42 |
0.000 |
1.070 |
3.220 |
0.000 |
0.00 |
| S9 |
0.000 |
0.927 |
1.010 |
0.00 |
0.000 |
1.080 |
0.000 |
0.000 |
0.00 |
| S6 |
1.010 |
1.000 |
0.996 |
1.07 |
1.080 |
1.000 |
1.040 |
0.898 |
0.00 |
| S2 |
0.740 |
1.020 |
0.929 |
3.22 |
0.000 |
1.040 |
3.300 |
0.000 |
0.00 |
| S1 |
2.600 |
1.180 |
0.908 |
0.00 |
0.000 |
0.898 |
0.000 |
0.000 |
0.00 |
| S3 |
0.000 |
0.590 |
2.430 |
0.00 |
0.000 |
0.000 |
0.000 |
0.000 |
0.00 |
protein domains:
protein domains:
Reads annotation summary
| |
cl_string |
domain |
Freq |
proportion |
| plastid
|
plastid
|
|
2
|
0.00024
|
| Reina Ty3-PROT
|
Reina
|
Ty3-PROT
|
1
|
0.00012
|
| Chlamyvir Ty3-RH
|
Chlamyvir
|
Ty3-RH
|
2
|
0.00024
|
|
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 10 |
6830 |
| 20 |
2780 |
| 2 |
1080 |
| 15 |
1020 |
| 109 |
648 |
| 66 |
368 |
| 55 |
342 |
| 82 |
232 |
| 33 |
141 |
| 184 |
23 |
| 1 |
11 |
| 3 |
10 |
| 6 |
6 |
| 34 |
5 |
| 220 |
5 |
| 39 |
3 |
| 179 |
2 |
| 56 |
1 |
| 100 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 15 |
473 |
0.119 |
| 10 |
461 |
0.14 |
| 82 |
325 |
0.139 |
| 33 |
301 |
0.0868 |
| 55 |
236 |
0.0973 |
| 20 |
169 |
0.0645 |
| 66 |
142 |
0.0568 |
| 109 |
104 |
0.0479 |
| 184 |
83 |
0.0419 |
| 39 |
66 |
0.0247 |
| 3 |
48 |
0.0106 |
| 6 |
43 |
0.00988 |
| 29 |
25 |
0.0091 |
| 34 |
15 |
0.0052 |
| 1 |
12 |
0.0035 |
| 2 |
12 |
0.00369 |
| 45 |
12 |
0.00382 |
| 179 |
11 |
0.00557 |
| 220 |
9 |
0.00495 |
| 48 |
7 |
0.00261 |
| 67 |
7 |
0.00273 |
| 14 |
6 |
0.00181 |
| 1560 |
6 |
0.0035 |
| 43 |
5 |
0.00169 |
| 90 |
5 |
0.0021 |
| 28 |
4 |
0.00146 |
| 185 |
4 |
0.00201 |
| 37 |
3 |
0.00122 |
| 56 |
3 |
0.00129 |
| 61 |
3 |
0.00118 |
| 80 |
3 |
0.00122 |
| 130 |
3 |
0.00142 |
| 1310 |
3 |
0.00175 |
| 3820 |
3 |
0.00175 |
| 24 |
2 |
0.000859 |
| 26 |
2 |
0.000759 |
| 84 |
2 |
0.000815 |
| 86 |
2 |
0.000905 |
| 87 |
2 |
0.000858 |
| 88 |
2 |
0.000847 |
| 128 |
2 |
0.000858 |
| 132 |
2 |
0.00109 |
| 135 |
2 |
0.00104 |
| 141 |
2 |
0.00106 |
| 146 |
2 |
0.000897 |
| 257 |
2 |
0.00114 |
| 5780 |
2 |
0.00117 |
| 10500 |
2 |
0.00117 |
| 13100 |
2 |
0.00117 |
| 18600 |
2 |
0.00117 |
| 18900 |
2 |
0.00117 |
| 19100 |
2 |
0.00117 |
| 23800 |
2 |
0.00117 |
| 33600 |
2 |
0.00117 |
| 34900 |
2 |
0.00117 |
| 41200 |
2 |
0.00117 |
| 48100 |
2 |
0.00117 |
| 69500 |
2 |
0.00117 |
| 16 |
1 |
0.00045 |
| 25 |
1 |
0.000406 |
| 47 |
1 |
0.000376 |
| 59 |
1 |
0.000347 |
| 62 |
1 |
0.00047 |
| 71 |
1 |
0.000379 |
| 72 |
1 |
0.000422 |
| 95 |
1 |
0.000443 |
| 99 |
1 |
0.000448 |
| 100 |
1 |
0.000468 |
| 101 |
1 |
0.000457 |
| 105 |
1 |
0.000448 |
| 117 |
1 |
0.000481 |
| 123 |
1 |
0.000438 |
| 126 |
1 |
0.000472 |
| 134 |
1 |
0.000566 |
| 165 |
1 |
0.000544 |
| 178 |
1 |
0.000527 |
| 211 |
1 |
0.000529 |
| 215 |
1 |
0.000578 |
| 278 |
1 |
0.000568 |
| 356 |
1 |
0.000576 |
| 360 |
1 |
0.000578 |
| 378 |
1 |
0.000577 |
| 757 |
1 |
0.000581 |
| 2100 |
1 |
0.000583 |
| 2490 |
1 |
0.000584 |
| 2570 |
1 |
0.000584 |
| 2970 |
1 |
0.000584 |
| 3230 |
1 |
0.000584 |
| 3870 |
1 |
0.000584 |
| 4730 |
1 |
0.000584 |
| 6270 |
1 |
0.000585 |
| 6530 |
1 |
0.000584 |
| 7210 |
1 |
0.000584 |
| 8790 |
1 |
0.000584 |
| 9160 |
1 |
0.000584 |
| 9860 |
1 |
0.000585 |
| 10300 |
1 |
0.000585 |
| 10900 |
1 |
0.000584 |
| 11800 |
1 |
0.000585 |
| 12500 |
1 |
0.000585 |
| 12800 |
1 |
0.000585 |
| 14500 |
1 |
0.000585 |
| 15800 |
1 |
0.000585 |
| 16600 |
1 |
0.000585 |
| 17400 |
1 |
0.000585 |
| 18800 |
1 |
0.000585 |
| 19200 |
1 |
0.000585 |
| 21100 |
1 |
0.000585 |
| 21900 |
1 |
0.000585 |
| 24100 |
1 |
0.000585 |
| 24400 |
1 |
0.000585 |
| 26100 |
1 |
0.000585 |
| 28100 |
1 |
0.000585 |
| 29500 |
1 |
0.000585 |
| 32500 |
1 |
0.000585 |
| 33200 |
1 |
0.000585 |
| 36400 |
1 |
0.000585 |
| 36600 |
1 |
0.000585 |
| 37200 |
1 |
0.000585 |
| 40400 |
1 |
0.000585 |
| 42000 |
1 |
0.000585 |
| 45600 |
1 |
0.000585 |
| 47100 |
1 |
0.000585 |
| 47400 |
1 |
0.000585 |
| 48800 |
1 |
0.000585 |
| 49100 |
1 |
0.000585 |
| 53300 |
1 |
0.000585 |
| 54500 |
1 |
0.000585 |
| 59500 |
1 |
0.000585 |
| 60300 |
1 |
0.000585 |
| 65800 |
1 |
0.000585 |
| 68500 |
1 |
0.000585 |
|
CL19 ----> CL15
No. of shared pairs: :473
CL19 ----> CL10
No. of shared pairs: :461
CL19 ----> CL82
No. of shared pairs: :325
CL19 ----> CL33
No. of shared pairs: :301
CL19 ----> CL55
No. of shared pairs: :236
CL19 ----> CL20
No. of shared pairs: :169
CL19 ----> CL66
No. of shared pairs: :142
CL19 ----> CL109
No. of shared pairs: :104
CL19 ----> CL184
No. of shared pairs: :83
CL19 ----> CL39
No. of shared pairs: :66
CL19 ----> CL3
No. of shared pairs: :48
CL19 ----> CL6
No. of shared pairs: :43
CL19 ----> CL29
No. of shared pairs: :25
CL19 ----> CL34
No. of shared pairs: :15
CL19 ----> CL1
No. of shared pairs: :12
CL19 ----> CL2
No. of shared pairs: :12
CL19 ----> CL45
No. of shared pairs: :12
CL19 ----> CL179
No. of shared pairs: :11