Cluster no. 18

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Cluster is part of supercluster: 2

Cluster characteristics:

size 8662
size_real 8662
ecount 933026
supercluster 2
annotations_summary 0.02% organelle/mitochondria
0.02% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
pair_completeness 0.550107372942019
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0432220039292731
satellite_probability 4.10822619131233e-19
consensus None
TAREAN_annotation Other
orientation_score 0.999991442257704

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2850
S5 26
S4 13
S7 2960
S9 2760
S6 9
S2 19
S1 13
S3 8
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 98500 646.0 528.0 108000 94200 236.0 388.0 436.0 366.0
S5 646 7.0 2.0 730 649 3.5 6.5 2.5 1.0
S4 528 2.0 1.0 618 550 2.0 2.0 2.0 1.5
S7 108000 730.0 618.0 118000 103000 250.0 440.0 464.0 377.0
S9 94200 649.0 550.0 103000 90600 238.0 400.0 404.0 333.0
S6 236 3.5 2.0 250 238 0.0 1.0 0.5 1.0
S2 388 6.5 2.0 440 400 1.0 3.0 1.5 0.5
S1 436 2.5 2.0 464 404 0.5 1.5 2.0 3.5
S3 366 1.0 1.5 377 333 1.0 0.5 3.5 1.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.000 0.972 0.954 1.000 0.998 0.993 0.963 1.020 1.040
S5 0.972 1.560 0.535 1.000 1.020 2.180 2.390 0.867 0.421
S4 0.954 0.535 0.321 1.020 1.040 1.500 0.881 0.833 0.758
S7 1.000 1.000 1.020 0.998 1.000 0.960 0.996 0.993 0.978
S9 0.998 1.020 1.040 1.000 1.000 1.050 1.030 0.986 0.988
S6 0.993 2.180 1.500 0.960 1.050 0.000 1.030 0.485 1.180
S2 0.963 2.390 0.881 0.996 1.030 1.030 1.820 0.858 0.347
S1 1.020 0.867 0.833 0.993 0.986 0.485 0.858 1.080 2.290
S3 1.040 0.421 0.758 0.978 0.988 1.180 0.347 2.290 0.796

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 2 0.00023
plastid plastid 2 0.00023
Galadriel Ty3-INT Galadriel Ty3-INT 1 0.00012

clusters with similarity:

Cluster Number of similarity hits
59 6990
136 1280
69 581
5 496
8 120
157 31
65 3

clusters connected through mates:

Cluster Number of shared
read pairs
k
59 978 0.402
136 551 0.29
8 41 0.0133
51 29 0.0118
22 14 0.00485
5 11 0.00353
157 11 0.00659
602 11 0.00863
91 10 0.00523
17 9 0.00313
4 8 0.0028
54 8 0.00382
65 6 0.00361
12 5 0.00204
69 4 0.00168
162 4 0.00228
1010 4 0.00316
9 3 0.00153
83 3 0.00184
106 3 0.00181
2080 3 0.00238
11 2 0.000801
78 2 0.000852
100 2 0.00119
114 2 0.00125
192 2 0.0014
253 2 0.00152
501 2 0.00157
3520 2 0.00159
4870 2 0.00159
6920 2 0.00159
7400 2 0.00159
8840 2 0.00159
9210 2 0.00159
12300 2 0.00159
12700 2 0.00159
15400 2 0.00159
16800 2 0.00159
19800 2 0.00159
20000 2 0.00159
24900 2 0.00159
38000 2 0.00159
39000 2 0.00159
39500 2 0.00159
39900 2 0.00159
49800 2 0.00159
64800 2 0.00159
66200 2 0.00159
69000 2 0.00159
40 1 0.000547
53 1 0.000551
68 1 0.000489
75 1 0.000537
102 1 0.000616
103 1 0.000663
107 1 0.000547
235 1 0.000746
256 1 0.000752
687 1 0.000788
700 1 0.000789
840 1 0.000791
958 1 0.000791
1490 1 0.000794
5320 1 0.000794
5400 1 0.000794
5950 1 0.000794
6080 1 0.000795
6110 1 0.000795
6210 1 0.000795
6990 1 0.000795
7690 1 0.000795
9240 1 0.000794
9260 1 0.000794
10700 1 0.000795
11000 1 0.000794
13000 1 0.000795
13500 1 0.000795
14600 1 0.000795
15300 1 0.000795
16700 1 0.000795
17200 1 0.000795
17700 1 0.000795
17800 1 0.000795
18100 1 0.000795
18500 1 0.000795
19900 1 0.000795
22600 1 0.000795
22700 1 0.000795
22800 1 0.000795
24000 1 0.000795
25500 1 0.000795
25700 1 0.000795
26800 1 0.000795
28000 1 0.000795
29900 1 0.000795
30600 1 0.000795
31000 1 0.000795
31200 1 0.000795
31800 1 0.000795
32200 1 0.000795
35000 1 0.000795
39800 1 0.000795
40200 1 0.000795
40400 1 0.000795
43400 1 0.000795
43900 1 0.000795
50400 1 0.000795
52300 1 0.000795
52400 1 0.000795
53700 1 0.000795
55700 1 0.000795
55700 1 0.000795
56200 1 0.000795
57300 1 0.000795
58500 1 0.000795
58800 1 0.000795
60300 1 0.000795
61300 1 0.000795
63400 1 0.000795
65400 1 0.000795
66600 1 0.000795
67000 1 0.000795
68000 1 0.000795
68800 1 0.000795
70100 1 0.000795
70600 1 0.000795

CL18 ----> CL59

image

No. of shared pairs: :978

CL18 ----> CL136

image

No. of shared pairs: :551

CL18 ----> CL8

image

No. of shared pairs: :41

CL18 ----> CL51

image

No. of shared pairs: :29

CL18 ----> CL22

image

No. of shared pairs: :14

CL18 ----> CL5

image

No. of shared pairs: :11

CL18 ----> CL157

image

No. of shared pairs: :11

CL18 ----> CL602

image

No. of shared pairs: :11

CL18 ----> CL91

image

No. of shared pairs: :10