Cluster no. 17

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Cluster is part of supercluster: 2

Cluster characteristics:

size 8796
size_real 8796
ecount 1057708
supercluster 2
annotations_summary 0.01% organelle/plastid
pair_completeness 0.462830533843339
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0961800818553888
satellite_probability 1.92325708281545e-15
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2840
S5 13
S4 20
S7 2970
S9 2890
S6 23
S2 27
S1 12
S3 4
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 109000 472.0 851.0 113000 114000 965.0 1560.0 486.0 165.0
S5 472 3.0 3.0 486 470 5.5 7.5 1.0 0.0
S4 851 3.0 5.0 863 877 6.5 12.0 4.0 2.0
S7 113000 486.0 863.0 116000 117000 970.0 1620.0 502.0 172.0
S9 114000 470.0 877.0 117000 118000 1000.0 1660.0 500.0 175.0
S6 965 5.5 6.5 970 1000 6.0 12.0 6.5 0.5
S2 1560 7.5 12.0 1620 1660 12.0 24.0 7.0 2.0
S1 486 1.0 4.0 502 500 6.5 7.0 2.0 1.5
S3 165 0.0 2.0 172 175 0.5 2.0 1.5 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.997 1.020 1.010 1.000 1.000 1.010 0.990 1.000 0.990
S5 1.020 1.510 0.835 1.010 0.970 1.350 1.120 0.484 0.000
S4 1.010 0.835 0.768 0.994 1.000 0.881 0.985 1.070 1.560
S7 1.000 1.010 0.994 0.999 0.999 0.985 0.999 1.000 1.000
S9 1.000 0.970 1.000 0.999 1.000 1.010 1.010 0.990 1.010
S6 1.010 1.350 0.881 0.985 1.010 0.717 0.869 1.530 0.343
S2 0.990 1.120 0.985 0.999 1.010 0.869 1.050 0.999 0.831
S1 1.000 0.484 1.070 1.000 0.990 1.530 0.999 0.929 2.030
S3 0.990 0.000 1.560 1.000 1.010 0.343 0.831 2.030 0.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00011

clusters with similarity:

Cluster Number of similarity hits
22 29300
139 72
54 11
412 10
401 7
91 3

clusters connected through mates:

Cluster Number of shared
read pairs		 k
22 1200 0.369
139 55 0.0293
91 28 0.0123
8 25 0.00729
65 21 0.0104
5 15 0.00432
11 13 0.00455
401 11 0.00675
4 9 0.0028
12 9 0.00321
18 9 0.00313
75 7 0.00315
412 6 0.0037
36 5 0.00196
59 5 0.00179
107 5 0.00229
1020 5 0.00308
51 4 0.00142
53 4 0.00184
78 4 0.00148
83 4 0.00201
140 4 0.00194
157 4 0.00197
2230 4 0.00247
9 3 0.0013
21 3 0.00143
32 3 0.00136
69 3 0.0011
100 3 0.00147
136 3 0.00133
227 3 0.0018
4490 3 0.00185
4910 3 0.00185
5180 3 0.00185
9900 3 0.00186
10400 3 0.00186
16900 3 0.00186
40 2 0.000914
54 2 0.000816
103 2 0.00107
162 2 0.000945
198 2 0.00111
248 2 0.00119
253 2 0.00119
287 2 0.0012
1640 2 0.00123
2080 2 0.00124
2820 2 0.00124
7840 2 0.00124
15000 2 0.00124
26500 2 0.00124
32100 2 0.00124
33600 2 0.00124
35000 2 0.00124
39400 2 0.00124
39900 2 0.00124
51200 2 0.00124
51900 2 0.00124
59900 2 0.00124
62000 2 0.00124
64200 2 0.00124
7 1 0.000328
68 1 0.000416
106 1 0.000495
124 1 0.000544
131 1 0.000512
135 1 0.000544
150 1 0.000569
166 1 0.00056
172 1 0.000596
173 1 0.000549
215 1 0.000611
218 1 0.000614
221 1 0.00058
234 1 0.000614
235 1 0.000589
267 1 0.000611
277 1 0.000607
404 1 0.000611
405 1 0.000611
591 1 0.000617
699 1 0.000616
787 1 0.000614
855 1 0.000615
915 1 0.000615
958 1 0.000616
987 1 0.000615
1300 1 0.000616
1600 1 0.000618
2900 1 0.000617
3010 1 0.000618
3110 1 0.000618
3120 1 0.000618
3590 1 0.000618
3660 1 0.000618
3780 1 0.000619
4750 1 0.000618
5070 1 0.000618
5830 1 0.000618
6940 1 0.000619
7240 1 0.000619
7530 1 0.000618
7810 1 0.000619
9060 1 0.000619
11400 1 0.000619
11800 1 0.000619
11900 1 0.000619
12600 1 0.000619
12800 1 0.000619
13200 1 0.000619
13500 1 0.000619
13700 1 0.000619
15000 1 0.000619
15300 1 0.000619
15500 1 0.000619
15800 1 0.000619
17700 1 0.000619
19200 1 0.000619
19300 1 0.000619
19300 1 0.000619
19400 1 0.000619
21300 1 0.000619
22900 1 0.000619
23300 1 0.000619
23400 1 0.000619
23500 1 0.000619
23700 1 0.000619
24500 1 0.000619
24600 1 0.000619
26200 1 0.000619
26300 1 0.000619
26500 1 0.000619
26900 1 0.000619
27000 1 0.000619
28000 1 0.000619
30100 1 0.000619
31000 1 0.000619
31600 1 0.000619
32300 1 0.000619
32400 1 0.000619
33200 1 0.000619
33900 1 0.000619
34100 1 0.000619
34700 1 0.000619
35200 1 0.000619
35500 1 0.000619
37800 1 0.000619
38900 1 0.000619
39400 1 0.000619
39600 1 0.000619
40100 1 0.000619
41500 1 0.000619
42400 1 0.000619
44000 1 0.000619
46600 1 0.000619
47600 1 0.000619
47700 1 0.000619
47900 1 0.000619
48000 1 0.000619
49700 1 0.000619
51900 1 0.000619
54500 1 0.000619
55300 1 0.000619
57200 1 0.000619
57800 1 0.000619
58200 1 0.000619
58400 1 0.000619
59800 1 0.000619
60100 1 0.000619
60300 1 0.000619
60600 1 0.000619
61300 1 0.000619
61500 1 0.000619
61900 1 0.000619
63800 1 0.000619
67100 1 0.000619
67800 1 0.000619
68400 1 0.000619
68700 1 0.000619
70700 1 0.000619
70800 1 0.000619

CL17 ----> CL22

image

No. of shared pairs: :1195

CL17 ----> CL139

image

No. of shared pairs: :55

CL17 ----> CL91

image

No. of shared pairs: :28

CL17 ----> CL8

image

No. of shared pairs: :25

CL17 ----> CL65

image

No. of shared pairs: :21

CL17 ----> CL5

image

No. of shared pairs: :15

CL17 ----> CL11

image

No. of shared pairs: :13

CL17 ----> CL401

image

No. of shared pairs: :11