Cluster no. 16

Cluster no. 16

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Cluster is part of supercluster: 6

Cluster characteristics:

size	9176
size_real	9176
ecount	165873
supercluster	6
annotations_summary	26.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 16.38% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT 13.39% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH 8.82% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH 1.37% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT 0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT 0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatI:Ty3-INT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness	0.798862968045481
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000762859633827376
satellite_probability	2.63652108321905e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	6
S5	3050
S4	3040
S7	8
S9	7
S6	3050
S2	0
S1	7
S3	7

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	7.5	18.0	0.0	0.0	12.5	0	0.0	0.0
S5	7.5	18100.0	18600.0	65.0	64.5	18000.0	0	73.0	43.5
S4	18.0	18600.0	19100.0	64.5	78.5	18200.0	0	94.0	46.5
S7	0.0	65.0	64.5	1.0	0.0	65.5	0	0.5	0.0
S9	0.0	64.5	78.5	0.0	0.0	65.0	0	0.5	0.0
S6	12.5	18000.0	18200.0	65.5	65.0	17400.0	0	73.0	40.5
S2	0.0	0.0	0.0	0.0	0.0	0.0	0	0.0	0.0
S1	0.0	73.0	94.0	0.5	0.5	73.0	0	1.0	0.0
S3	0.0	43.5	46.5	0.0	0.0	40.5	0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.595	1.400	0.000	0.000	1.010	NA	0.000	0.000
S5	0.595	0.994	0.998	0.998	0.933	1.010	NA	0.910	1.010
S4	1.400	0.998	1.000	0.970	1.110	0.996	NA	1.150	1.050
S7	0.000	0.998	0.970	4.300	0.000	1.030	NA	1.740	0.000
S9	0.000	0.933	1.110	0.000	0.000	0.959	NA	1.640	0.000
S6	1.010	1.010	0.996	1.030	0.959	0.996	NA	0.928	0.955
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	0.000	0.910	1.150	1.740	1.640	0.928	NA	2.830	0.000
S3	0.000	1.010	1.050	0.000	0.000	0.955	NA	0.000	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-PROT Ale Ty1-PROT 1 0.00011

Athila Ty3-INT Athila Ty3-INT 3 0.00033

Reina Ty3-INT Reina Ty3-INT 1 0.00011

TatI Ty3-INT TatI Ty3-INT 1 0.00011

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 126 0.01373

TatV Ty3-INT TatV Ty3-INT 2401 0.26166

TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 1 0.00011

TatV Ty3-RH TatV Ty3-RH 1229 0.13394

TatIV_Ogre Ty3-RT TatIV_Ogre Ty3-RT 6 0.00065

TatV Ty3-RT TatV Ty3-RT 1503 0.16380

TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 5 0.00054

TatV Ty3-aRH TatV Ty3-aRH 809 0.08816

clusters with similarity:

Cluster	Number of similarity hits

97	51
122	30
94	16
120	14

clusters connected through mates:

Cluster	Number of shared read pairs	k

120	159	0.174
97	93	0.134
122	92	0.13
94	34	0.0399
14	11	0.00519
3	7	0.0021
6	6	0.0019
56	5	0.00441
1800	5	0.00962
2180	5	0.00966
4830	5	0.00969
86	4	0.00394
3240	4	0.00774
4370	4	0.00775
1	3	0.00134
61	3	0.00222
90	3	0.00253
14500	3	0.00583
17100	3	0.00583
15	2	0.000718
31	2	0.00158
37	2	0.00159
47	2	0.00137
70	2	0.00239
87	2	0.00176
145	2	0.00312
15200	2	0.00389
21000	2	0.00389
21100	2	0.00389
24900	2	0.00389
30600	2	0.00389
41800	2	0.00389
55000	2	0.00389
59700	2	0.00389
10	1	0.000478
13	1	0.000491
19	1	0.00045
20	1	0.000702
28	1	0.000646
29	1	0.000645
33	1	0.00044
39	1	0.00068
41	1	0.000907
45	1	0.000514
48	1	0.000672
49	1	0.000487
81	1	0.00113
88	1	0.000858
93	1	0.000856
95	1	0.000944
99	1	0.000966
105	1	0.000963
115	1	0.000826
117	1	0.00113
121	1	0.00128
128	1	0.000882
178	1	0.00142
181	1	0.00113
252	1	0.00168
1220	1	0.00193
1270	1	0.00193
1680	1	0.00192
2570	1	0.00193
3720	1	0.00194
4150	1	0.00194
4220	1	0.00194
4530	1	0.00194
4600	1	0.00194
5050	1	0.00194
12300	1	0.00195
13400	1	0.00195
13700	1	0.00194
14300	1	0.00194
21500	1	0.00195
27000	1	0.00195
27400	1	0.00195
28000	1	0.00195
36800	1	0.00195
39600	1	0.00195
44600	1	0.00195
46500	1	0.00195
52100	1	0.00195
52400	1	0.00195
53000	1	0.00195
60000	1	0.00195
61500	1	0.00195
62600	1	0.00195
63000	1	0.00195
67200	1	0.00195

CL16 ----> CL120

No. of shared pairs: :159

CL16 ----> CL97

No. of shared pairs: :93

CL16 ----> CL122

No. of shared pairs: :92

CL16 ----> CL94

No. of shared pairs: :34

CL16 ----> CL14

No. of shared pairs: :11